OA Publications of the Max Planck Institute

Journal Article

Benner, P.; Dolgov, S.; Onwunta, A.; Stoll, M.: Low-Rank Solvers for Unsteady Stokes-Brinkman Optimal Control Problem with Random Data. Computer Methods in Applied Mechanics and Engineering 304, pp. 26 - 54 (2016)

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Benner, P.; Goyal, P. K.: Multipoint Interpolation of Volterra Series and H₂-Model Reduction for a Family of Bilinear Descriptor Systems. Systems & Control Letters 97, pp. 1 - 11 (2016)

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Journal Article

Benner, P.; Kürschner, P.; Saak, J.: Frequency-Limited Balanced Truncation with Low-Rank Approximations. SIAM Journal on Scientific Computing 38 (1), pp. A471 - A499 (2016)

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Benner, P.; Kürschner, P.; Tomljanović, Z.; Truhar, N.: Semi-Active Damping Optimization of Vibrational Systems using the Parametric Dominant Pole Algorithm. Zeitschrift für Angewandte Mathematik und Mechanik 96 (5), pp. 604 - 619 (2016)

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Benner, P.; Onwunta, A.; Stoll, M.: Block-diagonal Preconditioning for Optimal Control Problems Constrained by PDEs with Uncertain Inputs. SIAM Journal on Matrix Analysis and Applications 37 (2), pp. 491 - 518 (2016)

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Benner, P.; Saak, J.; Uddin, M. M.: Structure Preserving Model Order Reduction of Large Sparse Second-Order Index-1 Systems and Application to a Mechatronics Model. Mathematical and Computer Modelling of Dynamical Systems 22 (6), pp. 509 - 523 (2016)

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Benner, P.; Sima, V.; Voigt, M.: Algorithm 961 - FORTRAN 77 Subroutines for the Solution of Skew-Hamiltonian/Hamiltonian Eigenproblems. ACM Transactions on Mathematical Software 42 (3), 24, 26 pages (2016)

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Journal Article

Bordron, P.; Latorre, M.; Cortés, M.-P.; González, M.; Thiele, S.; Siegel, A.; Maass, A.; Eveillard, D.: Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. MicrobiologyOpen 5 (1), pp. 106 - 117 (2016)

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Journal Article

Buchholz, H. K.; Emel'yanenko, V. N.; Lorenz, H.; Verevkin, S. P.: An Examination of the Phase Transition Thermodynamics of (S)- and (RS)-Naproxen as a Basis for the Design of Enantioselective Crystallization Processes. European Journal of Pharmaceutical Sciences 105 (5), pp. 1676 - 1683 (2016)

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Journal Article

Cammann, C.; Rath, A.; Reichl, U.; Lingel, H.; Brunner-Weintierl, M.; Simeoni, L.; Schraven, B.; Lindquist, J. A.: Early changes in the metabolic profile of activated CD8+ T cells. BMC Biology 17 (1), 28 (2016)

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Journal Article

Dolgov, S.; Pearson, J. W.; Savostyanov, D. V.; Stoll, M.: Fast tensor product solvers for optimization problems with fractional differential equations as constraints. Applied Mathematics and Computation 273, pp. 604 - 623 (2016)

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Journal Article

Fachet, M.; Hermsdorf, D.; Rihko-Struckmann, L.; Sundmacher, K.: Flow cytometry enables dynamic tracking of algal stress response: A case study using carotenogenesis in Dunaliella salina. Algal Research (13), pp. 227 - 234 (2016)

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Journal Article

Fehr, J.; Heiland, J.; Himpe, C.; Saak, J.: Best Practices for Replicability, Reproducibility and Reusability of Computer-based Experiments exemplified by Model Reduction Software. AIMS Mathematics 1 (3), pp. 261 - 281 (2016)

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Journal Article

Feng, L.; Yue, Y.; Banagaaya, N.; Meuris, P.; Schoenmaker, W.; Benner, P.: Parametric Modeling and Model Order Reduction for (Electro-)Thermal Analysis of Nanoelectronic Structures. Journal of Mathematics in Industry 6 (1), 10, 16 pages (2016)

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Journal Article

Flassig, R.; Fachet, M.; Höffner, K.; Barton, P. I.; Sundmacher, K.: Dynamic flux balance modeling to increase the production of high-value compounds in green microalgae. Biotechnology for Biofuels 9 (165), pp. 1 - 12 (2016)

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Journal Article

Frensing, T.; Kupke, S. Y.; Bachmann, M.; Fritzsche, S.; Gallo Ramirez, L. E.; Reichl, U.: Influenza virus intracellular replication dynamics, release kinetics, and particle morphology during propagation in MDCK cells. Applied Microbiology and Biotechnology 100 (16), pp. 7181 - 7192 (2016)

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Journal Article

Gao, K.; Yang, J.; Seidel-Morgenstern, A.; Hamel, C.: Methane Dehydro-Aromatization: Potential of a Mo/MCM-22 Catalyst and Hydrogene-Selective Membranes. Chemie-Ingenieur-Technik 88 (1-2), pp. 168 - 176 (2016)

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Journal Article

Gerstl, M. P.; Klamt, S.; Jungreuthmayer, C.; Zanghellini, J.: Exact quantification of cellular robustness in genome-scale metabolic networks. Bioinformatics 32 (5), pp. 730 - 737 (2016)

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Journal Article

Heiland, J.: A Differential-Algebraic Riccati Equation for Applications in Flow Control. SIAM Journal on Control and Optimization 54 (2), pp. 718 - 739 (2016)

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Journal Article

Hennig, R.; Cajic, S.; Borowiak, M.; Hoffmann, M.; Kottler, R.; Reichl, U.; Rapp, E.: Towards personalized diagnostics via longitudinal study of the human plasma N-glycome. Biochimica et Biophysica Acta (BBA) - General Subjects 1860 (8), pp. 1728 - 1738 (2016)

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Journal Article

Heyer, R.; Benndorf, D.; Kohrs, F.; De Vrieze, J.; Boon, N.; Hoffmann, M.; Rapp, E.; Schlüter, A.; Sczyrba, A.; Reichl, U.: Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. Biotechnology for Biofuels 9 (9), 155 (2016)

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Journal Article

Hoffmann, M.; Marx, K.; Reichl, U.; Wuhrer, M.; Rapp, E.: Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins. Molecular and Cellular Proteomics 15 (2), pp. 624 - 641 (2016)

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Journal Article

Khandavilli, U. B. R.; Lusi, M.; Bhogala, B. R.; Maguire, A. R.; Stein, M.; Lawrence, S. E.: Diversity in a simple co-crystal: racemic and kryptoracemic behaviour. Chemical Communications 2016 (52), pp. 8309 - 8312 (2016)

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Journal Article

Kiedorf, G.; Wolff, T.; Seidel-Morgenstern, A.; Hamel, C.: Kinetic Analysis of the Hydrocarbon Total Oxidation Using Individually Measured Adsorption Isotherms. Chemie-Ingenieur-Technik 88 (11), pp. 1746 - 1760 (2016)

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Journal Article

Kiwala, D.; Olbrycht, M.; Balawejder, M.; Piatkowski, W.; Seidel-Morgenstern, A.; Antos, D.: Separation of Stereoisomeric Mixtures of Nafronyl as a Representative of Compounds Possessing Two Stereogenic Centers By Coupling Crystallization, Diastereoisomeric Conversion and Chromatography. Organic Process Research & Development 20 (3), pp. 615 - 625 (2016)

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Journal Article

Koch, S.; Benndorf, D.; Fronk, K.; Reichl, U.; Klamt, S.: Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Biotechnology for Biofuels 9, 17 (2016)

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Journal Article

Köhler, M.; Penke, C.; Saak, J.; Ezzatti, P.: Energy-Aware Solution of Linear Systems with Many Right Hand Sides. Computer Science - Research and Development 31 (4), pp. 215 - 235 (2016)

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Journal Article

Kolczyk, K.; Conradi, C.: Challenges in horizontal model integration. BMC Systems Biology (10), 28 (2016)

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McBride, K.; Vorholt, V.; Behr, A.; Sundmacher, K.: Thermomorphic Solvent Selection for Homogeneous Catalyst Recovery based on COSMO-RS. Chemical Engineering and Processing: Process Intensification 99, pp. 97 - 106 (2016)

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Journal Article

Meininger, M.; Stepath, M.; Hennig, R.; Cajic, S.; Rapp, E.; Rotering, H.; Wolff, M. W.; Reichl, U.: Sialic acid-specific affinity chromatography for the separation of erythropoietin glycoforms using serotonin as a ligand. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences 1012-1013, pp. 193 - 203 (2016)

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Journal Article

Münzberg, S.; Lorenz, H.; Seidel-Morgenstern, A.: Multistage Countercurrent Crystallization for the Separation of Solid Solutions. Chemical Engineering and Technology 39 (7), pp. 1242 - 1250 (2016)

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Journal Article

Pirwitz, K.; Rihko-Struckmann, L.; Sundmacher, K.: Valorization of the Aqueous Phase obtained from Hydrothermally Treated Dunaliella Salina Remnant Biomass. Bioresource Technology 219, pp. 64 - 71 (2016)

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Journal Article

Qamar, S.; Akram, N.; Seidel-Morgenstern, A.: Analysis of general rate model of linear chromatography considering finite rates of the adsorption and desorption steps. Chemical Engineering Research and Design 111, pp. 13 - 23 (2016)

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Journal Article

Qamar, S.; Perveen, S.; Seidel-Morgenstern, A.: Analysis of a Two-Dimensional Nonequilibrium Model of Linear Reactive Chromatography Considering Irreversible and Reversible Reactions. Industrial and Engineering Chemistry Research 55 (8), pp. 2471 - 2482 (2016)

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Journal Article

Qamar, S.; Perveen, S.; Seidel-Morgenstern, A.: Numerical Approximation of a Two-Dimensional Nonlinear and Nonequilibrium Model of Reactive Chromatography. Industrial and Engineering Chemistry Research 55 (33), pp. 9003 - 9014 (2016)

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Journal Article

Qamar, S.; Perveen, S.; Seidel-Morgenstern, A.: Numerical approximation of nonlinear and non-equilibrium two-dimensional model of chromatography. Computers and Chemical Engineering 94, pp. 411 - 427 (2016)

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Journal Article

Qamar, S.; Sattar, F. A.; Abbasi, J. N.; Seidel-Morgenstern, A.: Numerical simulation of nonlinear chromatography with core–shell particles applying the general rate model. Chemical Engineering Science 147, pp. 54 - 64 (2016)

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Journal Article

Qamar, S.; Sattar, F. A.; Seidel-Morgenstern, A.: Theoretical investigation of thermal effects in non-isothermal non-equilibrium reactive liquid chromatography. Chemical Engineering Research and Design 115 (Part A), pp. 145 - 159 (2016)

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Qamar, S.; Seidel-Morgenstern, A.: Extending the potential of moment analysis in chromatography. Trends in Analytical Chemistry 81, pp. 87 - 101 (2016)

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Journal Article

Rihko-Struckmann, L.; Datta, P.; Wenzel, M.; Sundmacher, K.; Dharanipragada, N.V.R.A.; Poelman, H.; Galvita, V.; Marin, G. B.: Hydrogen and Carbon Monoxide Production by Chemical Looping over Iron-Aluminium Oxides. Energy Technology 4 (2), pp. 304 - 313 (2016)

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Journal Article

Silva, J. P.; Dufrechou, E.; Ezzatti, P.; Quintana-Ortí, E. S.; Remón, A.; Benner, P.: Balancing Energy and Performance in Dense Linear System Solvers for Hybrid ARM+GPU. CLEI Electronic Journal 19 (1), 2, 13 pages (2016)

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Journal Article

Stoll, M.; Pearson, J. W.; Maini, P. K.: Fast solvers for optimal control problems from pattern formation. Journal of Computational Physics 304, pp. 27 - 45 (2016)

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Journal Article

Struwe, W.B.; Agravat, S.; Aoki-Kinoshita, K.F.; Campbell, M.P.; Costello, C.E.; Dell, A.; Ten, F.; Haslam, S.M.; Karlsson, N.G.; Khoo, K.H. et al.; Kolarich, D.; Liu, Y.; McBride , R.; Novotny, M.V.; Packer, N.H.; Paulson, J.C.; Rapp, E.; Ranzinger, R.; Rudd, P.M.; Smith, D.F.; Tiemeyer, M.; Wells , L.; York, W.S.; Zaia, J.; Kettner, C.: The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycobiology 26 (9), pp. 907 - 910 (2016)

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Journal Article

Tanca, A.; Palomba, A.; Fraumene, C.; Pagnozzi, D.; Manghina, V.; Deligios, M.; Muth, T.; Rapp, E.; Martens, L.; Addis, M. F. et al.; Uzzau, S.: The impact of sequence database choice on metaproteomic results in gut microbiota studies. Microbiome 4, 51 (2016)

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Journal Article

Tapia, F.; Vázquez-Ramirez, D.; Genzel, Y.; Reichl, U.: Bioreactors for high cell density and continuous multi-stage cultivations: options for process intensification in cell culture-based viral vaccine production. Applied Microbiology and Biotechnology 100 (5), pp. 2121 - 2132 (2016)

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Journal Article

Temmel, E.; Eicke, M.; Lorenz, H.; Seidel-Morgenstern, A.: A Short-Cut Method for the Quantification of Crystallization Kinetics. 2. Experimental Application. Crystal Growth & Design 16 (12), pp. 6756 - 6768 (2016)

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Journal Article

Temmel, E.; Eisenschmidt, H.; Lorenz, H.; Sundmacher, K.; Seidel-Morgenstern, A.: A Short-Cut Method for the Quantification of Crystallization Kinetics. 1. Method Development. Crystal Growth & Design 16 (12), pp. 6743 - 6755 (2016)

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Journal Article

ter Maten, E. J. W.; Putek, P.; Günther, M.; Pulch, R.; Tischendorf, C.; Strohm, C.; Schoenmaker, W.; Meuris, P.; de Smedt, B.; Benner, P. et al.; Feng, L.; Banagaaya, N.; Yue, Y.; Janssen, R.; Dohmen, J. J.; Tasić, B.; Deleu, F.; Gillon, R.; Wieers, A.; Brachtendorf, H.-G.; Bittner, K.; Kratochvíl, T.; Petřzela, J.; Sotner, R.; Göthans, T.; Dřínovský, J.; Schöps, S.; Duque Guerra, D. J.; Casper, T.; De Gersem, H.; Römer, U.; Reynier, P.; Barroul, P.; Masliah, D.; Rousseau, B.: Nanoelectronic COupled Problems Solutions - nanoCOPS: Modelling, Multirate, Model Order Reduction, Uncertainty Quantification, Fast Fault Simulation. Journal of Mathematics in Industry 7 (1), 2, 19 pages (2016)

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Thiesler, C. T.; Cajic, S.; Hoffmann, D.; Thiel, C.; van Diepen, L.; Hennig, R.; Sgodda, M.; Weißmann, R.; Reichl, U.; Steinemann, D. et al.; Diekmann, U.; Huber, N. M. B.; Oberbeck, A.; Cantz, T.; Kuss, A. W.; Körner, C.; Schambach, A.; Rapp, E.; Buettner, F. F. R.: Glycomic Characterization of Induced Pluripotent Stem Cells Derived from a Patient Suffering from Phosphomannomutase 2 Congenital Disorder of Glycosylation (PMM2-CDG). Molecular and Cellular Proteomics 15 (4), pp. 1435 - 1452 (2016)

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