OA Publications of the Max Planck Institute

Ahuja, K.; Benner, P.; de Sturler, E.; Feng, L.: Recycling BiCGSTAB with an Application to Parametric Model Order Reduction. SIAM Journal on Scientific Computing 37 (5), pp. S429 - S446 (2015)

Altmann, R.; Heiland, J.: Finite Element Decomposition and Minimal Extension for Flow Equations. ESAIM: Mathematical Modelling and Numerical Analysis 49 (5), pp. 1489 - 1509 (2015)

Auer, A. A.; Cap, S.; Antonietti, M.; Cherevko, S.; Deng, X.; Papakonstantinou, G.; Sundmacher, K.; Brüller, S.; Antonyshyn, I.; Dimitratos, N. et al.; Davis, R. J.; Böhm, K.-H.; Fechler, N.; Freakley, S.; Grin, Y.; Gunnoe, B. T.; Haj-Hariri, H.; Hutchings, G.; Liang, H.; Mayrhofer, K. J. J.; Muellen, K.; Neese, F.; Ranjan, C.; Sankar, M.; Schlögl, R.; Schüth, F.; Spanos, I.; Stratmann, M.; Tüysüz, H.; Vidaković-Koch, T.; Yi , Y.; Zangari, G.: MAXNET Energy – Focusing Research in Chemical Energy Conversion on the Electrocatlytic Oxygen Evolution. Green 5 (1-6), pp. 7 - 21 (2015)

Bänsch, E.; Benner, P.; Saak, J.; Weichelt, H. K.: Riccati-Based Boundary Feedback Stabilization of Incompressible Navier-Stokes Flow. SIAM Journal on Scientific Computing 37 (2), pp. A832 - A858 (2015)

Benner, P.; Breiten, T.: Two-Sided Projection Methods for Nonlinear Model Order Reduction. SIAM Journal on Scientific Computing 37 (2), pp. B239 - B260 (2015)

Benner, P.; Gugercin, S.; Willcox, K.: A Survey of Projection-Based Model Reduction Methods for Parametric Dynamical Systems. SIAM Review 57 (4), pp. 483 - 531 (2015)

Benner, P.; Heiland, J.: Time-dependent Dirichlet Conditions in Finite Element Discretizations. ScienceOpen Research, pp. 1 - 18 (2015)

Benner, P.; Onwunta, A.; Stoll, M.: Low-Rank Solution of Unsteady Diffusion Equations with Stochastic Coefficients. SIAM/ASA Journal on Uncertainty Quantification 3 (1), pp. 622 - 649 (2015)

Benner, P.; Schneider, J.: Uncertainty Quantification for Maxwell's Equations Using Stochastic Collocation and Model Order Reduction. International Journal for Uncertainty Quantification 5 (3), pp. 195 - 208 (2015)

Bosch, J.; Stoll, M.: A fractional inpainting model based on the vector-valued Cahn–Hilliard equation. SIAM Journal on Imaging Sciences 8 (4), pp. 2352 - 2382 (2015)

D`Allessandro, L. A.; Samaga, R.; Maiwald, T.; Rho, S.-H.; Bonefas, S.; Raue, A.; Iwamoto, N.; Kienast, A.; Waldow, K.; Meyer, R. et al.; Schilling, M.; Timmer, J.; Klamt, S.; Klingmüller, U.: Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. PLoS Computational Biology 11 (4), e1004192 (2015)

Dolgov, S.; Khoromskij, B. N.; Litvinenko, A.; Matthies, H. G.: Polynomial Chaos Expansion of Random Coefficients and the Solution of Stochastic Partial Differential Equations in the Tensor Train Format. SIAM/ASA Journal on Uncertainty Quantification 3 (1), pp. 1109 - 1135 (2015)

Dolgov, S. V.; Tyrtyshnikov, E. E.: On evolution of solution times for the chemical master equation of the enzymatic futile cycle. Russian Journal of Numerical Analysis and Mathematical Modelling 30 (1), pp. 37 - 42 (2015)

Erdrich, P.; Steuer, R.; Klamt, S.: An algorithm for the reduction of genome-scale metabolic network models to meaningful core models. BMC Systems Biology 9, 48 (2015)

Flassig, R.; Migal, I.; van der Zalm, E.; Rihko-Struckmann, L.; Sundmacher, K.: Rational selection of experimental readout and intervention sites for reducing uncertainties in computational model predictions. BMC Bioinformatics 16, 13 (2015)

Gallo Ramirez, L. E.; Nikolay, A.; Genzel, Y.; Reichl, U.: Bioreactor concepts for cell culture-based viral vaccine production. Expert Review of Vaccines 14 (9), pp. 1181 - 1191 (2015)

Genzel, Y.: Designing cell lines for viral vaccine production: Where do we stand? Biotechnology Journal 10 (5), pp. 728 - 740 (2015)

Hädicke, O.; Bettenbrock, K.; Klamt, S.: Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli. Biotechnology and Bioengineering 112 (10), pp. 2195 - 2199 (2015)

Hädicke, O.; Klamt, S.: Manipulation of the ATP pool as a tool for metabolic engineering. Biochemical Society Transactions (London) 43 (6), pp. 1140 - 1145 (2015)

Heldt, F. S.; Kupke, S. Y.; Dorl, S.; Frensing, T.; Reichl, U.: Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection. Nature Communications 6, 8938 (2015)

Heyer, R.; Kohrs, F.; Reichl, U.; Benndorf, D.: Metaproteomics of complex microbial communities in biogas plants. Microbial Biotechnology 8 (5), pp. 749 - 763 (2015)

Hossain, M.-S.; Uddin, M. M.: Reduce Order Modelling of Power System Models Using Interpolatory Projections Technique. International Journal of Modeling and Optimization 5 (3), pp. 228 - 233 (2015)

Hylton, R.; Tizzard, G. J.; Threlfall, T. L.; Ellis, A. L.; Coles, S. J.; Seaton, C. C.; Schulze, E.; Lorenz, H.; Seidel-Morgenstern, A.; Stein, M. et al.; Price, S. L.: Are the crystal structures of enantiopure and racemic mandelic acids determined by kinetics or thermodynamics? Journal of the American Chemical Society 137 (34), pp. 11095 - 11104 (2015)

Karst, F.; Maestri, M.; Freund, H.; Sundmacher, K.: Reduction of Microkinetic Reaction Models for Reactor Optimization exemplified for Hydrogen Production from Methane. Chemical Engineering Journal 281, pp. 981 - 994 (2015)

Karsten, C. B.; Büttner, F. F. R.; Cajic, S.; Nehlmeier, I.; Neumann, B.; Klippert, A.; Sauermann, U.; Reichl, U.; Gerardy-Schahn, R.; Rapp, E. et al.; Stahl-Hennig, C.; Pöhlmann, S.: Exclusive Decoration of Simian Immunodeficiency Virus Env with High-Mannose Type N-Glycans Is Not Compatible with Mucosal Transmission in Rhesus Macaques. Journal of Virology 89 (22), pp. 11727 - 11733 (2015)

Khoromskaia, V.; Khoromskij, B. N.: Tensor numerical methods in quantum chemistry: from Hartree–Fock to excitation energies. Physical Chemistry Chemical Physics 17 (47), pp. 31491 - 31509 (2015)

Kohrs, F.; Wolter, S.; Benndorf, D.; Heyer, R.; Hoffmann, M.; Rapp, E.; Bremges, A.; Sczyrba, A.; Schlüter, A.; Reichl, U.: Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics 15 (20), pp. 3585 - 3589 (2015)

Lang, N.; Saak, J.; Benner, P.; Ihlenfeldt, S.; Nestmann, S.; Schädlich, K.: Towards the Identification of Heat Induction in Chip Removing Processes via an Optimal Control Approach. Production Engineering: Development & Research 9 (3), pp. 343 - 349 (2015)

Liang, X.; Li, R.-C.: The Hyperbolic Quadratic Eigenvalue Problem. Forum of Mathematics, Sigma 3, e13 (2015)

McBride, K.; Sundmacher, K.: Data driven conceptual process design for the hydroformylation of 1-dodecene in a thermomorphic solvent system. Industrial & Engineering Chemistry Research 54 (26), pp. 6761 - 6771 (2015)

Michailidou, M.; Melas, I.; Messinis, D.; Klamt, S.; Alexopoulos, L.; Kolisis, F.; Loutrari, H.: Network-Based Analysis of Nutraceuticals in Human Hepatocellular Carcinomas Reveals Mechanisms of Chemopreventive Action. CPT: Pharmacometrics & Systems Pharmacology 4 (6), pp. 350 - 361 (2015)

Mueller, S.; Huard, J.; Waldow, K.; Huang, X.; D'Alessandro, L.; Bohl, S.; Börner, K.; Grimm, D.; Klamt, S.; Klingmüller, U. et al.; Schilling, M.: T160‐phosphorylated CDK2 defines threshold for HGF‐dependent proliferation in primary hepatocytes. Molecular Systems Biology 11, 795 (2015)

Püttker, S.; Kohrs, F.; Benndorf, D.; Heyer, R.; Rapp, E.; Reichl, U.: Metaproteomics of activated sludge from a wastewater treatment plant- a pilot study. Proteomics 15 (20), pp. 3596 - 3601 (2015)

Serve, A.; Pieler, M.; Benndorf, D.; Rapp, E.; Wolff, M. W.; Reichl, U.: Comparison of Influenza Virus Particle Purification Using Magnetic Sulfated Cellulose Particles with an Established Centrifugation Method for Analytics. Analytical Chemistry 87 (21), pp. 10708 - 10711 (2015)

Stoll, M.; Bosch, J.: Preconditioning for vector-valued Cahn-Hilliard equations. SIAM Journal on Scientific Computing 37 (5), pp. S216 - S243 (2015)

Stoll, M.; Breiten, T.: A low-rank in time approach to PDE-constrained optimization. SIAM Journal on Scientific Computing 37 (1), pp. B1 - B29 (2015)

Thiele, S.; Cerone, L.; Saez-Rodriguez, J.; Siegel, A.; Guciolowski, C.; Klamt, S.: Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies. BMC Bioinformatics 16 (1), 345 (2015)

Varničić, M.; Vidaković-Koch, T.; Sundmacher, K.: Gluconic Acid Synthesis in an Electroenzymatic Reactor. Electrochimica Acta 174, pp. 480 - 487 (2015)

Yazdi, S.; Durdagi, S.; Naumann, M.; Stein, M.: Structural modeling of the N-terminal signal–receiving domain of IκBα. frontiers in Molecular Biosciences 2, 32 (2015)

Zhang, Y.; Feng, L.; Li, S.; Benner, P.: An Efficient Output Error Estimation for Model Order Reduction of Parametrized Evolution Equations. SIAM Journal on Scientific Computing 37 (6), pp. B910 - B936 (2015)

Zuyev, A.; Sawodny, O.: Modelling and Control of a Shell Structure Based on a Finite Dimensional Variational Formulation. Mathematical and Computer Modelling of Dynamical Systems: Methods, Tools and Applications in Engineering and Related Sciences 21 (6), pp. 591 - 612 (2015)

Bajcinca, N.; Hofmann, S.; Eisenschmidt, H.; Sundmacher, K.: Generalizing ODE modeling structure for multivariate systems with distributed parameters. 9th IFAC Symposium on Advanced Control of Chemical Processes, ADCHEM 2015, Whistler, Canada, June 07, 2015 - June 10, 2015. IFAC-PapersOnLine 48 (8), pp. 240 - 247 (2015)

Dürr, R.; Franz, A.; Kienle, A.: Combination of limited measurement information and multidimensional population balance models. 9th IFAC Symposium on Biological and Medical Systems - BMS 2015 -, Berlin, Germany, August 31, 2015 - September 02, 2015. IFAC-PapersOnLine 48 (20), pp. 261 - 266 (2015)

Dürr, R.; Müller, T.; Kienle, A.: Efficient DQMOM for Multivariate Population Balance Equations and Application to Virus Replication in Cell Cultures. 8th Vienna International Conference on Mathematical Modelling, Vienna University of Technology, Vienna, Austria, February 18, 2015 - February 20, 2015. IFAC-PapersOnLine 48 (1), pp. 29 - 34 (2015)

Dürr, R.; Palis, S.; Kienle, A.: Online parameter identification of facet growth kinetics in crystal morphology population balance models. The 7th World Congress on Particle Technology (WCPT7). Procedia Engineering 102, pp. 1336 - 1345 (2015)

Eaton, J.; Grundel, S.; Gürbüzbalaban, M.; Overton, M. L.: Polynomial Stabilization with Bounds on the Controller Coefficients. 8th IFAC Symposium on Robust Control Design - ROCOND 2015, Bratislava, Slovakia, July 08, 2015 - July 11, 2015. IFAC-PapersOnLine 48 (14), pp. 382 - 387 (2015)

Geyyer, R.; Palis, S.; Kienle, A.: Robust control of continuous crystallization processes. 1st IFAC Conference on Modeling, Identification and Control of Nonlinear Sytems MICNON 2015, Sankt Petersburg, Russia, June 24, 2015 - June 26, 2015. IFAC-PapersOnLine 48 (11), pp. 598 - 603 (2015)

Khlopov, D.; Mangold, M.: Automatic Model Reduction of Linear Population Balance Models by Proper Orthogonal Decomposition. 8th Vienna International Conference on Mathematical Modelling, Vienna University of Technology, Vienna, Austria, February 18, 2015 - February 20, 2015. IFAC-PapersOnLine 48 (1), pp. 11 - 16 (2015)

Kramer, B.; Tüngler, R.; Bettenbrock, K.; Conradi, C.: A compact mathematical model of mandelate racemase production and chaperone overexpression in E. coli. 8th Vienna Interantional Conference on Mathematical Modelling , Vienna, Austria, February 18, 2015 - February 20, 2015. IFAC-PapersOnLine 48 (1), pp. 23 - 28 (2015)

Palis, S.; Bück, A.; Kienle, A.: Entropy-based control of continuous Fluidized bed spray granulation processes. 5th IFAC workshop on Lagrangian and Hamiltonian Methods for Nonlinear Control, Lyon, July 04, 2015 - July 07, 2015. IFAC-PapersOnLine 48 (13), pp. 154 - 157 (2015)