OA Publications of the Max Planck Institute

Journal Article (94)

2024
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Al-Shaibani, M. A. S.; Sakoleva, T.; Živković, L. A.; Austin, H. P.; Dörr, M.; Hilfert, L.; Haak, E.; Bornscheuer, U. T.; Vidaković-Koch, T.: Product Distribution of Steady–State and Pulsed Electrochemical Regeneration of 1,4‐NADH and Integration with Enzymatic Reaction. ChemistryOpen 13 (8), e202400064 (2024)
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Arigoni-Affolter, I.; Losfeld, M.-E.; Hennig, R.; Rapp, E.; Aebi, M.: A hierarchical structure in the N-glycosylation process governs the N-glycosylation output: prolonged cultivation induces glycoenzymes expression variations that are reflected in the cellular N-glycome but not in the protein and site-specific glycoprofile of CHO cells. Glycobiology 34 (8), cwae045 (2024)
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Aumann, Q.; Werner, S. W. R.: Adaptive Choice of Near-Optimal Expansion Points for Interpolation-Based Structure-Preserving Model Reduction. Advances in Computational Mathematics 50 (4), 79 (2024)
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Bauer, J.; Klamt, S.: OptMSP: A Toolbox for Designing Optimal Multi-Stage (Bio)Processes. Journal of Biotechnology 383, pp. 94 - 102 (2024)
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Bauer, S.; Benner, P.; Bereau, T.; Blum, V.; Boley, M.; Carbogno, C.; A. Catlow, C. R.; Dehm, G.; Eibl, S.; Ernstorfer, R. et al.; Fekete, Á.; Foppa, L.; Fratzl, P.; Freysoldt, C.; Gault, B.; M. Ghiringhelli, L.; Sajal, K. G.; Gladyshev, A.; Goyal, P. K.; Hattrick-Simpers, J.; Kabalan, L.; Karpov, P.; S. Khorrami, M.; Koch, C.; Kokott, S.; Kosch, T.; Kowalec, I.; Kremer, K.; Leitherer, A.; Li, Y.; Liebscher, C. H.; Logsdail, A. J.; Lu, Z.; Luong, F.; Marek, A.; Merz, F.; R. Mianroodi, J.; Neugebauer, J.; Purcell, T. A. R.; Raabe, D.; Rampp, M.; Rossi, M.; Rost, J.-M.; Saalmann, U.; Saxena, A.; Sbailo, L.; Scheffler, M.; Scheidgen, M.; Schloz, M.; Schmidt, D. F.; Teshuva, S.; Trunschke, A.; Wei, Y.; Weikum, G.; Xian, R. P.; Yao, Y.; Zhao, M.: Roadmap on Data-Centric Materials Science. Modelling and Simulation in Materials Science and Engineering 32, 063301,90 pages (2024)
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Behrendt, G.; Vlachonikolou, M.; Tietgens, H.; Bettenbrock, K.: Construction and comparison of different vehicles for heterologous gene expression in Zymomonas mobilis. Microbial Biotechnology 17 (1), e14381 (2024)
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Behrens, J.; Tiedemann, S.; Kunde, T.; von Langermann, J.; Kienle, A.: Moving Horizon Parameter Estimation for an Enzyme-Catalyzed Transamination Reaction with Integrated Product Removal. Chemie-Ingenieur-Technik 96 (12), pp. 1751 - 1766 (2024)
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Benner, P.; Goyal, P. K.: Balanced Truncation Model Order Reduction For Quadratic-Bilinear Control Systems. Advances in Computational Mathematics 50, 88 (2024)
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Benner, P.; Goyal, P. K.; Pontes Duff, I.: Identification of Dominant Subspaces for Linear Structured Parametric Systems and Model Reduction. International Journal for Numerical Methods in Engineering 125 (15), e7496 (2024)
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Benner, P.; Goyal, P. K.; Van Dooren, P.: Parameterized Interpolation of Passive Systems. SIAM Journal on Matrix Analysis and Applications 45 (2), pp. 1035 - 1053 (2024)
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Benner, P.; Gugercin, S.; Werner, S. W. R.: Structured Interpolation for Multivariate Transfer Functions of Quadratic-Bilinear Systems. Advances in Computational Mathematics 50, 18 (2024)
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Benner, P.; Richter, T.; Weinhandl, R.: A Low-rank Method for Parameter-dependent Fluid-structure Interaction Discretizations with Hyperelasticity. Zeitschrift für angewandte Mathematik und Mechanik 104 (10), e202300562 (2024)
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Bhandari, S.; Lorenz, H.; Seidel-Morgenstern, A.: Shortcut model to evaluate the performance of continuous preferential crystallization for conglomerates forming chiral systems. Chemical Engineering Science 299, 120539 (2024)
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Bhaskaran, S.; Miličić, T.; Vidaković-Koch, T.; Kumar Surasani , V.; Tsotsas, E.; Vorhauer-Huget, N.: Model PEM water electrolyzer cell for studies of periodically alternating drainage/imbibition cycles. International Journal of Hydrogen Energy 77, pp. 1432 - 1442 (2024)
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Böttinger, K.; Regl, C.; Schäpertöns, V.; Rapp, E.; Wohlschlager, T.; Huber, C. G.: “Small is beautiful” – examining reliable determination of low- abundant therapeutic antibody glycovariants. Journal of Pharmaceutical Analysis 14 (10), 100982 (2024)
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Chellappa, S.; Feng, L.; Benner, P.: Accurate Error Estimation for Model Reduction of Nonlinear Dynamical Systems via Data-enhanced Error Closure. Computer Methods in Applied Mechanics and Engineering 420, 116712 (2024)
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Chernev, V. P.; Kienle, A.; Vande Wouver, A.: Moving horizon estimation and control of a binary simulated moving bed chromatographic processes with Langmuir isotherms. Computers and Chemical Engineering 189, 108804 (2024)
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Coux, O.; Farràs, R.; Abbas, M.; Barrio, R.; Blattner, C.; Brix, K.; Chachami, G.; Chevet, E.; Clague, M. J.; Dantuma, N. et al.; Rankov, A. D.; Galdeano, C.; Giglione, C.; Glickman, M. H.; Lalmanach, G.; Lindon, C.; Matthiesen, R.; Meroni, G.; Pick, E.; Poidevin, L.; Rivas, C.; Rodriguez, M. S.; Sammler, E.; Shiber, A.; Skoulakis, E. M.C.; Stein, M.; Vertegaal, A. C.O.: ProteoCure: A European network to fine-tune the proteome. Biochimie 226, pp. 4 - 9 (2024)
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Dietz, K.; Sagstetter, C.; Speck, M.; Roth, A.; Klamt, S.; Fabarius, J. T.: A novel engineered strain of Methylorubrum extorquens for methylotrophic production of glycolic acid. Microbial Cell Factories 23, 344 (2024)
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Espinel-Rios, S.; Behrendt, G.; Bauer, J.; Morabito, B.; Pohlodek, J.; Schütze, A.; Findeisen, R.; Bettenbrock, K.; Klamt, S.: Experimentally implemented dynamic optogenetic optimization of ATPase expression using knowledge-based and Gaussian-process-supported models. Process Biochemistry (143), pp. 174 - 185 (2024)
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Espinel-Rios, S.; Morabito, B.; Pohlodek, J.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Toward a modeling, optimization, and predictive control framework for fed-batch metabolic cybergenetics. Biotechnology and Bioengineering 121 (1), pp. 366 - 379 (2024)
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Feng, L.; Chellappa, S.; Benner, P.: A Posteriori Error Estimation for Model Order Reduction of Parametric Systems. Advanced Modeling and Simulation in Engineering Sciences 11, 5 (2024)
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Frohwitter, J.; Behrendt, G.; Klamt, S.; Bettenbrock, K.: A new Zymomonas mobilis platform strain for the efficient production of chemicals. Microbial Cell Factories 23, 143 (2024)
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Gänsch, J.; Oliynyk, K.; Potharaju, S.; Seidel-Morgenstern, A.; Lorenz, H.: Continuous Chiral Inversion by Coupling Enzymatic Racemization with Enantioselective Fluidized Bed Crystallization. Industrial & Engineering Chemistry Research 63, pp. 18525 - 18535 (2024)
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Geschke, A.; Zimmermann, R. T.; Bremer, J.; Sundmacher, K.: Core‐Shell Catalyst Pellets for CO2Methanation in a Pilot‐Scale Fixed‐Bed Reactor. Chemie Ingenieur Technik 96, pp. 1718 - 1725 (2024)
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Gkimisis, L.; Richter, T.; Benner, P.: Adjacency-based, Non-Intrusive Model Reduction for Vortex-Induced Vibrations. Computers & Fluids 275, 106248 (2024)
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Göbel, S.; Kazemi, O.; Ma, J.; Jordan, I.; Sandig, V.; Paulissen, J.; Kerstens, W.; Thibaut, H. J.; Reichl, U.; Dallmeier, K. et al.; Genzel, Y.: Parallel Multifactorial Process Optimization and Intensification for High-Yield Production of Live YF17D-Vectored Zika Vaccine. Vaccines 12 (7), 755 (2024)
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Göbel, S.; Pelz, L.; Silva, C. A. T.; Brühlmann, B.; Hill, C.; Altomonte, J.; Kamen, A.; Reichl, U.; Genzel, Y.: Production of recombinant vesicular stomatitis virus-based vectors by tangential flow depth filtration. Applied Microbiology and Biotechnology 108 (1), 240 (2024)
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Gosea, I. V.; Gugercin, S.; Werner, S. W. R.: Structured Barycentric Forms for Interpolation-Based Data-Driven Reduced Modeling of Second-Order Systems. Advances in Computational Mathematics 50, 26 (2024)
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Goyal, P. K.; Benner, P.: Generalized Quadratic-Embeddings for Nonlinear Dynamics using Deep Learning. Physica D: Nonlinear Phenomena 463, 134158 (2024)
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Goyal, P. K.; Peherstorfer, B.; Benner, P.: Rank-Minimizing and Structured Model Inference. SIAM Journal on Scientific Computing 46 (3), pp. A1879 - A1902 (2024)
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Goyal, P. K.; Pontes Duff, I.; Benner, P.: Dominant Subspaces of High-Fidelity Polynomial Structured Parametric Dynamical Systems and Model Reduction. Advances in Computational Mathematics 50, 42 (2024)
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Grundel, S.; Sarna, N.: Hyper-Reduction for Parametrized Transport Dominated Problems via Adaptive Reduced Meshes. Partial Differential Equations and Applications 5 (1), 3 (2024)
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Guzman Ruiz, L.; Zollner, A. M.; Hoxie, I.; Küchler, J.; Hausjell, C.; Mesurado, T.; Krammer, F.; Jungbauer, A.; Pereira Aguilar, P.; Klausberger, M. et al.; Grabherr, R.: Enhancing NA immunogenicity through novel VLP designs. Vaccine 42 (24), 126270 (2024)
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Heiland, J.; Yongho, K.: Convolutional Autoencoders, Clustering and POD for Low-dimensional Parametrization of Navier-Stokes Equations. Computers & Mathematics with Applications 175, pp. 49 - 61 (2024)
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Hellwig, P.; Dittrich, A.; Heyer, R.; Reichl, U.; Benndorf, D.: Detection, isolation and characterization of phage-host complexes using BONCAT and click chemistry. Frontiers in Microbiology 15, 1434301 (2024)
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Hellwig, P.; Kautzner, D.; Heyer, R.; Dittrich, A.; Wibberg, D.; Busche, T.; Winkler, A.; Reichl, U.; Benndorf, D.: Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins. ISME Communications 4 (1), ycae153 (2024)
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Heyer, R.; Hellwig, P.; Maus, I.; Walke, D.; Schlüter, A.; Hassa, J.; Sczyrba, A.; Tubbesing, T.; Klocke, M.; Mächtig, T. et al.; Schallert, K.; Seick, I.; Reichl, U.; Benndorf, D.: Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenter. Water Research 250, 121020 (2024)
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Huber, N.; Alcalá Orozco, E. A.; Rexer, T.; Reichl, U.; Klamt, S.: Model-based optimization of cell-free enzyme cascades exemplified for the production of GDP-fucose. Metabolic Engineering 81, pp. 10 - 25 (2024)
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Hussein, F. A.; Joshi, M.; Kaur-Ghumaan, S.; Stein, M.: Hydrogen Evolving Mono‐Nuclear Manganese Complexes with Carefully Positioned Pyridine Base Ligands. ChemCatChem 16 (18), e202400450 (2024)
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Jameel, F.; Stein, M.: Chemical accuracy for ligand-receptor binding Gibbs energies through multi-level SQM/QM calculations. Physical Chemistry Chemical Physics 26, pp. 21197 - 21203 (2024)
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Kalosha, J.; Yevgenieva, Y.; Zuyev, A.: Partial Stabilization of an Orbiting Satellite Model with a Flexible Attachment. Journal of Mathematical Sciences (accepted)
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Kapadia, H.; Feng, L.; Benner, P.: Active-Learning-Driven Surrogate Modeling for Efficient Simulation of Parametric Nonlinear Systems. Computer Methods in Applied Mechanics and Engineering 419, 116657 (2024)
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Karsten, C. B.; Buettner, F. F. R.; Cajic, S.; Nehlmeier, I.; Roshani, B.; Klippert, A.; Sauermann, U.; Stolte-Leeb, N.; Reichl, U.; Gerardy-Schahn, R. et al.; Rapp, E.; Stahl-Hennig, C.; Pöhlmann, S.: Macrophage- and CD4+ T cell-derived SIV differ in glycosylation, infectivity and neutralization sensitivity. PLOS Pathogens 20 (5), e1012190 (2024)
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Khesali Aghtaei, H.; Heyer, R.; Reichl, U.; Benndorf, D.: Improved biological methanation using tubular foam-bed reactor. Biotechnology for Biofuels and Bioproducts 17, 66 (2024)
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König-Mattern, L.; Sanchez Medina, E. I.; Komarova, A. O.; Linke, S.; Rihko-Struckmann, L.; Luterbacher, J. S.; Sundmacher, K.: Machine learning-supported solvent design for lignin-first biorefineries and lignin upgrading. Chemical Engineering Journal 495, 153524 (2024)
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Kutscha, R.; Tomin, T.; Birner-Gruenberger, R.; Bekiaris, P. S.; Klamt, S.; Pflügl, S.: Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demand. Biotechnology for Biofuels and Bioproducts 17, 110 (2024)
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Lee, J. W.; Zarei, S.; Kienle, A.; Seidel-Morgenstern, A.: Short-Cut Design of Double-Layer Simulated Moving Bed Chromatography for Continuous Ternary Mixture Separation: Langmuir Isotherms. Industrial & Engineering Chemistry Research 63 (39), pp. 16873 - 16884 (2024)
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Leipold, J.; Jung, M.; Keßler, T.; Kienle, A.: Nonlinear Behavior of Methanol Synthesis Compared to CO2 Methanation. Chemical Engineering and Technology 47 (3), pp. 531 - 536 (2024)
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Liljegren-Sailer, B.; Gosea, I. V.: Data-Driven and Low-Rank Implementations of Balanced Singular Perturbation Approximation. SIAM Journal on Scientific Computing 46 (1), pp. A483 - A507 (2024)
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