MPG.PuRe Contact at MPI Magdeburg

profile_image
Kristina Reinhold
Head Librarian
Phone:+49 391 6110 - 146Fax:+49 391 6110 - 506

OA Publications at MPI Magdeburg

Open Access Publications at MPI Magdeburg

Journal Article (251)

  1. 201.
    Cheviakov, A. F.; Ward, M. J.; Straube, R.: An Asymptotic Analysis of the Mean First Passage Time for Narrow Escape Problems: Part II: The Sphere. SIAM Multiscale Modeling and Simulation 8 (3), pp. 836 - 870 (2010)
  2. 202.
    Franke, R.; Theis, F.J.; Klamt, S.: From Binary to Multivalued to Continuous Models: The Iac Operon as a Case Study. Journal of Integrative Bioinformatics 7 (1), p. 151 (2010)
  3. 203.
    Hao Yu, E.; Krewer, U.; Scott, K.: Principles and Materials Aspects of Direct Alkaline Alcohol Fuel Cells. Energies 3 (8), pp. 1499 - 1528 (2010)
  4. 204.
    Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.: Recent Advances in Enzymatic Fuel Cells: Experiments and Modeling. Energies 3 (4), pp. 803 - 846 (2010)
  5. 205.
    Klamt, S.; Flassig, R.; Sundmacher, K.: TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics 26 (17), pp. 2160 - 2168 (2010)
  6. 206.
    Ritter, J.; Wahl, A.; Freund, S.; Genzel, Y.; Reichl, U.: Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling. BMC Systems Biology 4, p. 61 (2010)
  7. 207.
    Samaga, R.; von Kamp, A.; Klamt, S.: Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. Journal of Computational Biology 17 (1), pp. 39 - 53 (2010)
  8. 208.
    Straube, R.; Nicola, E. M.: Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system. BMC Systems Biology 4, 165 (2010)
  9. 209.
    Streif, S.; Oesterhelt, D.; Marwan, W.: A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. BMC Systems Biology 4, 27 (2010)
  10. 210.
    von Langermann, J.; Lorenz, H.; Böhm, O.; Flemming, A.; Bernsdorf, A.; Köckerling, M.; Schinzer, D.; Seidel-Morgenstern, A.: R*,S*-6,7-Dimethoxy-3-(4-methoxy-6-methyl-5,6,7,8-tetrahydro-[1,3]dioxolo[4,5-g]isoquinolin-5-yl)-3H-isobenzofuran-1-one (racemic alpha-Noscapine). Acta Crystallographica Section E: Structure Reports Online 66, p. o570 (2010)
  11. 211.
    Coombs, D.; Straube, R.; Ward, M. J.: Diffusion on a Sphere with Localized Traps: Mean First Passage Time, Eigenvalue Asymptotics, and Fekete Points. SIAM Journal on Applied Mathematics 70 (1), pp. 302 - 332 (2009)
  12. 212.
    Gogolenko, S.Y.; Svjatnyi, V.: Architecture aware parallelization of solvers for PDE systems on geometrical graphs. Computer science - Research and Development 23 (3-4), pp. 225 - 230 (2009)
  13. 213.
    Grötsch, M.; Mangold, M.; Kienle, A.: Analysis of the Coupling Behavior of PEM Fuel Cells and DC-DC Converters. Energies 2 (1), pp. 71 - 96 (2009)
  14. 214.
    Hussain, A.; Seidel-Morgenstern, A.; Tsotsas, E.: Effect of top layer's material and flow direction on mass transfer through multi-layer ceramic membranes. Canadian Journal of Pure & Applied Sciences 3 (3), pp. 993 - 1000 (2009)
  15. 215.
    Hussain, A.; Seidel-Morgenstern, A.; Tsotsas, E.: Influence of volumetric flow rate and temperature on mass transfer in composite ceramic membranes for membrane reactors. Canadian Journal of Pure and Applied Sciences 3 (1), pp. 741 - 749 (2009)
  16. 216.
    Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.: Glucose electrooxidation for biofuel cell applications. Chemical and Biochemical Engineering Quarterly 23 (1), pp. 77 - 86 (2009)
  17. 217.
    Klamt, S.; von Kamp, A.: Computing Paths and Cycles in Biological Interaction Graphs. BMC Bioinformatics 10, p. 181 (2009)
  18. 218.
    Klamt, S.; Haus, U.-U.; Theis, F.: Hypergraphs and cellular networks. PLoS Computational Biology 5 (5), p. e1000385 (2009)
  19. 219.
    Mirschel, S.; Steinmetz, K.; Rempel, M.; Ginkel, M.; Gilles, E. D.: ProMoT: Modular Modeling for Systems Biology. Bioinformatics 25 (5), pp. 687 - 689 (2009)
  20. 220.
    Poltz, R.; Franke, R.; Schweitzer, K.; Klamt, S.; Gilles, E. D.; Naumann, M.: Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry 2, pp. 125 - 138 (2009)
  21. 221.
    Saez-Rodriguez, J.; Alexopoulos, L. G.; Epperlein, J.; Samaga, R.; Lauffenburger, D. A.; Klamt, S.; Sorger, P. K.: Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Molecular Systems Biology 5, p. 331 (2009)
  22. 222.
    Samaga, R.; Saez-Rodriguez, J.; Alexopoulos, L. G.; Sorger, P. K.; Klamt, S.: The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Computational Biology 5 (8), e1000438 (2009)
  23. 223.
    Schlatter, R.; Schmich, K.; Avalos Vizcarra, I.; Scheurich, P.; Sauter, T.; Borner, C.; Ederer, M.; Merfort, I.; Sawodny, O.: ON/OFF and Beyond - A Boolean Model of Apoptosis. PLoS Computational Biology 5 (12), p. e1000595 (2009)
  24. 224.
    Schlesner, M.; Miller, A.; Streif, S.; Staudinger, W.; Müller , J.; Scheffer, B.; Siedler, F.; Oesterhelt, D.: Identification of Archaea-specific chemotaxis proteins which interact with the flagellar apparatus. BMC Microbiology 9, 56 (2009)
  25. 225.
    Straube, R.; Ward, M. J.: An asymptotic analysis of intracellular signaling gradients arising from multiple small compartments. SIAM Journal on Applied Mathematics 70 (1), pp. 248 - 269 (2009)
  26. 226.
    Vidaković, T.; Christov, M.; Sundmacher, K.: A method for rough estimation of the catalyst surface area in a fuel cell. Journal of Applied Electrochemistry 39 (2), pp. 213 - 225 (2009)
  27. 227.
    Wittmann, D. M.; Krumsiek, J.; Saez, J.; Lauffenburger, D. A.; Klamt, S.; Theis, F.: Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling. BMC Systems Biology 3, 98 (2009)
  28. 228.
    Antoniukas, L.; Grammel, H.; Sasnauskas, K.; Reichl, U.: Profiling of external metabolites during production of hantavirus nucleocapsid protein with recombinant Saccharomyces cerevisiae. Biotechnology Letters 30 (3), pp. 415 - 420 (2008)
  29. 229.
    Conzelmann, H.; Fey, D.; Gilles, E. D.: Exact model reduction of combinatorial reaction networks. BMC Systems Biology 2, p. 78 (2008)
  30. 230.
    Franke, R.; Mueller, M.; Wundrack, N.; Gilles, E. D.; Klamt, S.; Kaehne, T.; Naumann, M.: Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction. BMC Systems Biology 2, 4 (2008)
  31. 231.
    Gangadwala, J.; Radulescu, G.; Kienle, A.; Steyer, F.; Sundmacher, K.: New processes for recovery of acetic acid from waste water. Clean Technology & Environmental Policy 3, pp. 245 - 254 (2008)
  32. 232.
    Glöckner, G.; Golderer, G.; Werner-Felmayer, G.; Meyer, S.; Marwan, W.: A first glimpse at the transcriptome of Physarum polycephalum. BMC Genomics 9, 6 (2008)
  33. 233.
    Klamt, S.; Grammel, H.; Straube, R.; Ghosh, R.; Gilles, E. D.: Modeling the electron transport chain of purple non-sulfur bacteria. Molecular Systems Biology 4, 156 (2008)
  34. 234.
    Koschorreck, M.; Gilles, E. D.: Mathematical modeling and analysis of insulin clearance in vivo. BMC Systems Biology 2, p. 43 (2008)
  35. 235.
    Koschorreck, M.; Gilles, E. D.: ALC: automated reduction of rule-based models. BMC Systems Biology 2, 91 (2008)
  36. 236.
    Lu, H.; Rihko-Struckmann, L.; Hanke-Rauschenbach, R.; Sundmacher, K.: Dynamic Behavior of a PEM Fuel Cell during Electrochemical CO Oxidation on a PtRu Anode. Topics in Catalysis 51, pp. 89 - 97 (2008)
  37. 237.
    Schulze-Horsel, J.; Genzel, Y.; Reichl, U.: Flow cytometric monitoring of influenza A virus infection in MDCK cells during vaccine production. BMC Biotechnology 8, p. 45 (2008)
  38. 238.
    Sewekow, E.; Keßler, L. C.; Seidel-Morgenstern, A.; Rothkoetter, H.-J.: Isolation of soy bean protein P34 from oil bodies using hydrophobic interaction chromatography. BMC Biotechnology 8, p. 27 (2008)
  39. 239.
    Wahl, S. A.; Nöh, K.; Wiechert, W.: 13C labeling experiments at metabolic nonstationary conditions: an exploratory study. BMC Bioinformatics 9, p. 152 (2008)
  40. 240.
    Beste, D. J.; Hooper, T.; Stewart, G.; Bonde, B.; Avignone-Rossa, C.; Bushell, M. E.; Wheeler, P.; Klamt, S.; Kierzek, A. M.; McFadden, J.: GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. Genome Biology 8, R89 (2007)
  41. 241.
    Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)
  42. 242.
    Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)
  43. 243.
    Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)
  44. 244.
    Lorenz, H.; Czapla, F.; Polenske, D.; Elsner, M. P.; Seidel-Morgenstern, A.: Crystallization based separation of enantiomers (Review). Journal of the University of Chemical Technology and Metallurgy 42 (1), pp. 5 - 16 (2007)
  45. 245.
    Noack, S.; Wahl, A.; Qeli, E.; Wiechert, W.: Visualizing Regulatory Interactions in Metabolic Networks. BMC Biology 5, p. 46 (2007)
  46. 246.
    Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)
  47. 247.
    Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7, 34 (2006)
  48. 248.
    Klamt, S.; Saez-Rodriguez, J.; Lindquist, J.; Simeoni, L.; Gilles, E. D.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7, p. 56 (2006)
  49. 249.
    Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)
  50. 250.
    Gagneur, J.; Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 5, 175 (2004)
 
loading content