MPG.PuRe Contact at MPI Magdeburg

OA Publications at MPI Magdeburg

Open Access Publications at MPI Magdeburg

Journal Article (307)

  1. 201.
    Kolarich, D.; Rapp, E.; Struwe, W. B.; Haslam, S. M.; Zaia, J.; McBride, R.; Agravat, S.; Campell, M. P.; Kato, M.; Ranzinger, R. et al.; Kettner, C.; York, W. S.: The Minimum Information Required for a Glycomics Experiment (MIRAGE) Project: Improving the Standards for Reporting Mass-spectrometry-based Glycoanalytic Data. Molecular and Cellular Proteomics 12 (4), pp. 991 - 995 (2013)
  2. 202.
    Kottler, R.; Mank, M.; Hennig, R.; Müller-Werner, B.; Stahl, B.; Reichl, U.; Rapp, E.: Development of a high-throughput glycoanalysis method for the characterization of oligosaccharides in human milk utilizing multiplexed capillary gel electrophoresis with laser-induced fluorescence detection. Electrophoresis 34 (16), pp. 2323 - 2336 (2013)
  3. 203.
    Melas, I. N.; Samaga, R.; Alexopoulos, L. G.; Klamt, S.: Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs. PLoS Computational Biology 9 (9), p. e1003204 (2013)
  4. 204.
    Muth, T.; Benndorf, D.; Reichl, U.; Rapp, E.; Martens, L.: Searching for a needle in a stack of needles: challenges in metaproteomics data analysis. Molecular BioSystems 9 (4), pp. 578 - 585 (2013)
  5. 205.
    Pearson, J. W.; Stoll, M.: Fast Iterative Solution of Reaction-Diffusion Control Problems Arising from Chemical Processes. SIAM Journal on Scientific Computing 35 (5), pp. B987 - B1009 (2013)
  6. 206.
    Pinna, A.; Heise, S.; Flassig, R.; de la Fuente, A.; Klamt, S.: Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation. BMC Systems Biology 7, p. 73 (2013)
  7. 207.
    Rodriguez-Fernandez, M.; Rehberg, M.; Kremling, A.; Banga, J. R.: Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems. BMC Systems Biology 7, 76 (2013)
  8. 208.
    Samaga, R.; Klamt, S.: Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks. Cell Communication and Signaling 11 (1), p. 43 (2013)
  9. 209.
    Sharma, P.; Stagge, S.; Bekker, M.; Bettenbrock, K.; Hellingwerf, K. J.: Kinase activity of ArcB from Escherichia coli is subject to regulation by both ubiquinone and demethylmenaquinone. PLoS One 8 (10), p. e7541 (2013)
  10. 210.
    Benner, P.; Mach, T.: Computing All or Some Eigenvalues of Symmetric ℋ-Matrices. SIAM Journal on Scientific Computing 34 (1), pp. A485 - A496 (2012)
  11. 211.
    Benner, P.; Breiten, T.: Interpolation-Based H2-Model Reduction of Bilinear Control Systems. SIAM Journal on Matrix Analysis and Applications 33 (3), pp. 859 - 885 (2012)
  12. 212.
    Conradi, C.; Flockerzi, D.: Switching in mass action networks based on linear inequalities. SIAM Journal on Applied Dynamical Systems 11 (1), pp. 110 - 134 (2012)
  13. 213.
    Flassig, R.; Sundmacher, K.: Optimal design of stimulus experiments for robust discrimination of biochemical reaction networks. Bioinformatics 28 (23), pp. 3089 - 3096 (2012)
  14. 214.
    Kolczyk, K.; Samaga, R.; Conzelmann, H.; Mirschel, S.; Conradi, C.: The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detail. BMC Bioinformatics 13, p. 251 (2012)
  15. 215.
    Kremling, A.; Goehler, A.; Jahreis, K.; Nees, M.; Auerbach, B.; Schmidt-Heck, W.; Kökpinar, Ö.; Geffers, R.; Rinas, U.; Bettenbrock, K.: Analysis and Design of Stimulus Response Curves of E. coli. Metabolites 2 (4), pp. 844 - 871 (2012)
  16. 216.
    Lohr, V.; Genzel, Y.; Jordan, I.; Katinger, D.; Mahr, S.; Sandig, V.; Reichl, U.: Live attenuated influenza viruses produced in a suspension process with avian AGE1.CR.pIX cells. BMC Biotechnology 12, p. 79 (2012)
  17. 217.
    Mangold, M.; Krasnyk, M.: Modellreduktion von Populationssystemen mit Hilfe von Proper Orthogonal Decomposition. At-Automatisierungstechnik 60 (9), pp. 561 - 573 (2012)
  18. 218.
    Palis, S.; Kienle, A.: Diskrepanzbasierte Regelung der kontinuierlichen Kristallisation. at - Automatisierungstechnik 60 (3), pp. 145 - 154 (2012)
  19. 219.
    Pandelia, M.-E.; Infossi, P.; Stein, M.; Guidici-Orticoni, M.-T.; Lubitz, W.: Spectroscopic characterization of the key catalytic intermediate Ni-C in the O2-tolerant [NiFe] hydrogenase I from Aquifex aeolicus: evidence of a weakly bound hydride. Chemical Communications 48 (6), pp. 823 - 825 (2012)
  20. 220.
    Pearson, J. W.; Stoll, M.; Wathen, A. J.: Regularization-Robust Preconditioners for Time-Dependent PDE-Constrained Optimization Problems. SIAM Journal on Matrix Analysis and Applications 33 (4), pp. 1126 - 1152 (2012)
  21. 221.
    Popov, M.; Nacheva, G.; Reichl, U.; Ivanov, I.: Effect of the 3’-terminal truncation of the human interferon-gamma gene on plasmid segregation in escherichia coli. Biotechnology and Biotechnological Equipment 26 (2), pp. 2930 - 2936 (2012)
  22. 222.
    Sommer, S.; Kienle, A.: Auto-Tuning of Multivariable PID Controllers Using Iterative Feedback Tuning. at - Automatisierungstechnik 60 (1), pp. 20 - 27 (2012)
  23. 223.
    Stein, M.; Pilli, M.; Bernauer, S.; Habermann, B. H.; Zerial, M.; Wade, R. C.: The Interaction Properties of the Human Rab GTPase Family – A Comparative Analysis Reveals Determinants of Molecular Binding Selectivity. PLoS ONE 7 (4), p. e34870 (2012)
  24. 224.
    Vidaković-Koch, T.; González Martinez, I.; Kuwertz, R.; Kunz, U.; Turek, T.; Sundmacher, K.: Electrochemical Membrane Reactors for Sustainable Chlorine Recycling. Membranes 2 (3), pp. 510 - 528 (2012)
  25. 225.
    Yu, E.H.; Wang, Y.; Krewer, U.; Li, L.; Scott, K.: Direct oxidation alkaline fuel cells: from materials to systems. Energy & Environmental Science 5 (2), pp. 5668 - 5680 (2012)
  26. 226.
    Baur, U.; Beattie, C.; Benner, P.; Gugercin, S.: Interpolatory Projection Methods for Parameterized Model Reduction. SIAM Journal on Scientific Computing 33 (5), pp. 2489 - 2518 (2011)
  27. 227.
    Benner, P.; Damm, T.: Lyapunov Equations, Energy Functionals, and Model Order Reduction of Bilinear and Stochastic Systems. SIAM Journal on Control and Optimization 49 (2), pp. 686 - 711 (2011)
  28. 228.
    Chen, L.; Zhou, T.; Ye, Y.; Qi, Z.; Freund, H.; Sundmacher, K.: Selective Oxidation of Cyclohexanol to Cyclohexanone in the Ionic Liquid 1-Octyl-3-Methylimidazolium Chloride. Chemical Communications 47 (33), pp. 9354 - 9356 (2011)
  29. 229.
    Hamel, C.; Wolff, T.; Seidel-Morgenstern, A.: Compatibility of Transport and Reaction in Membrane Reactors Used for the Oxidative Dehydrogenation of Short-Chain Hydrocarbons. International Journal of Chemical Reactor Engineering 9, p. A12 (2011)
  30. 230.
    Hädicke, O.; Grammel, H.; Klamt, S.: Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria. BMC Systems Biology 5, p. 150 (2011)
  31. 231.
    Kolvenbach, B. A.; Lenz, M.; Benndorf, D.; Rapp, E.; Fousek, J.; Vlcek, C.; Schäffer, A.; Gabriel, F. L.; Kohler, H.-P. E.; Corvini, P. F.: Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3. AMB Express 1, p. 8 (2011)
  32. 232.
    Lu, H.; Rihko-Struckmann, L.; Sundmacher, K.: Spontaneous oscillations of cell voltage, power density, and anode exit CO concentration in a PEM fuel cell. Physical Chemistry Chemical Physics 13 (40), pp. 18179 - 18185 (2011)
  33. 233.
    Petiot, E.; Jacob, D.; Lanthier, S.; Lohr, V.; Ansorge, S.; Kamen, A. A.: Metabolic and Kinetic analyses of influenza production in perfusion HEK293 cell culture. BMC Biotechnology 11 (84), pp. 1 - 12 (2011)
  34. 234.
    Popov, M.; Petrov, S. A.; Nacheva, G.; Ivanov, I.; Reichl, U.: Effects of a recombinant gene expression on ColE1-like plasmid segregation in Escherichia coli. BMC Biotechnology 11 (1), p. 18 (2011)
  35. 235.
    Roedig, J.; Rapp, E.; Höper, D.; Genzel, Y.; Reichl, U.: Impact of Host Cell Line Adaptation on Quasispecies Composition and Glycosylation of Influenza A Virus Hemagglutinin. PLoS One 6 (12), p. e27989 (2011)
  36. 236.
    Ryll, A.; Samaga, R.; Schaper, F.; Alexopoulos, L.G.; Klamt, S.: Large-scale models of IL-1 and IL-6 signaling and their hepatocellular specification. Molecular BioSystems 7 (12), pp. 3253 - 3270 (2011)
  37. 237.
    Shalaby, R.; Schauer, T.; Liedecke, W.; Raisch, J.: Amplifier design for EMG recording from stimulation electrodes during functional electrical stimulation leg cycling ergometry. Biomedizinische Technik 56 (1), pp. 23 - 33 (2011)
  38. 238.
    Zenith, F.; Krewer, U.: Simple and reliable model for estimation of methanol cross-over in direct methanol fuel cells and its application on methanol-concentration control. Energy & Environmental Science 4 (2), pp. 519 - 527 (2011)
  39. 239.
    Andres, C.; Meyer, S.; Dina, O. A.; Levine, J. D.; Hucho, T.: Quantitative automated microscopy (QuAM) elucidates growth factor specific signalling in pain sensitization. Molecular Pain 6, 98 (2010)
  40. 240.
    Attia, S. A.; Azhmyakov, V.; Raisch, J.: On an Optimization Problem for a Class of Impulsive Hybrid Systems. Discrete Event Dynamic Systems: Theory and Applications 20 (2 ), pp. 215 - 231 (2010)
  41. 241.
    Barrantes Bustinza, I. W.; Glockner, G.; Meyer, S.; Marwan, W.: Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum. BMC Genomics 11, 115 (2010)
  42. 242.
    Cheviakov, A. F.; Ward, M. J.; Straube, R.: An Asymptotic Analysis of the Mean First Passage Time for Narrow Escape Problems: Part II: The Sphere. SIAM Multiscale Modeling and Simulation 8 (3), pp. 836 - 870 (2010)
  43. 243.
    Franke, R.; Theis, F.J.; Klamt, S.: From Binary to Multivalued to Continuous Models: The Iac Operon as a Case Study. Journal of Integrative Bioinformatics 7 (1), p. 151 (2010)
  44. 244.
    Hao Yu, E.; Krewer, U.; Scott, K.: Principles and Materials Aspects of Direct Alkaline Alcohol Fuel Cells. Energies 3 (8), pp. 1499 - 1528 (2010)
  45. 245.
    Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.: Recent Advances in Enzymatic Fuel Cells: Experiments and Modeling. Energies 3 (4), pp. 803 - 846 (2010)
  46. 246.
    Klamt, S.; Flassig, R.; Sundmacher, K.: TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics 26 (17), pp. 2160 - 2168 (2010)
  47. 247.
    Ritter, J.; Wahl, A.; Freund, S.; Genzel, Y.; Reichl, U.: Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling. BMC Systems Biology 4, p. 61 (2010)
  48. 248.
    Samaga, R.; von Kamp, A.; Klamt, S.: Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. Journal of Computational Biology 17 (1), pp. 39 - 53 (2010)
  49. 249.
    Straube, R.; Nicola, E. M.: Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system. BMC Systems Biology 4, 165 (2010)
  50. 250.
    Streif, S.; Oesterhelt, D.; Marwan, W.: A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. BMC Systems Biology 4, 27 (2010)
 
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