IMPRS Publications

2014

Journal Article

Schaber, J.; Lapytsko, A.; Flockerzi, D.: Nested autoinhibitory feedbacks alter the resistance of homeostatic adaptive biochemical networks. Interface: Journal of the Royal Society 11 (91), p. 20130971 (2014)

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Swernath, S.; Kaspereit, M.; Kienle, A.: Coupled Continuous Chromatography and Racemization Processes for the Production of Pure Enantiomers. Chemical Engineering and Technology 37 (4), pp. 643 - 651 (2014)

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Tapia, F.; Vogel, T.; Genzel, Y.; Behrendt, I.; Hirschel, M.; Gangemi, J. D.; Reichl, U.: Production of high-titer human influenza A virus with adherent and suspension MDCK cells cultured in a single-use hollow fiber bioreactor. Vaccine 32 (8), pp. 1003 - 1011 (2014)

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Wang, W.; Wolff, M. W.; Reichl, U.; Sundmacher, K.: Avidity of influenza virus: Model-based identification of adsorption kinetics from surface plasmon resonance experiments. Journal of Chromatography A 1326, pp. 125 - 129 (2014)

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Zhou, T.; Qi, Z.; Sundmacher, K.: Model-based method for the screening of solvents for chemical reactions. Chemical Engineering Science 115, pp. 177 - 185 (2014)

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2013

Journal Article

Ashraf, A. B.; Janiga, G.; Temmel, E.; Seidel-Morgenstern, A.; Thévenin, D.: Numerical analysis of hydrodynamics and crystal motion in a batch crystallizer. Journal of Crystal Growth 372, pp. 219 - 229 (2013)

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Benner, P.; Breiten, T.: Low Rank Methods for a Class of Generalized Lyapunov Equations and Related Issues. Numerische Mathematik 124 (3), pp. 441 - 470 (2013)

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Benner, P.; Voigt, M.: Spectral Characterization and Enforcement of Negative Imaginariness for Descriptor Systems. Linear Algebra and its Applications 439 (4), pp. 1104 - 1129 (2013)

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Journal Article

Berg, P.; Janiga, G.; Beuing, O.; Neugebauer, M.; Thévenin, D.: Hemodynamics in Multiple Intracranial Aneurysms: The Role of Shear Related to Rupture. International Journal of Bioscience, Biochemistry and Bioinformatics (IJBBB) 3 (3), pp. 177 - 181 (2013)

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Blätke, M. A.; Dittrich, A.; Rohr, C.; Heiner, M.; Schaper, F.; Marwan, W.: JAK/STAT signalling – an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology. Molecular BioSystems 9 (6), pp. 1290 - 1307 (2013)

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Borchers, S.; Freund, S.; Rath, A.; Streif, S.; Reichl, U.; Findeisen, R.: Identification of Growth Phases and Influencing Factors in Cultivations with AGE1.HN Cells Using Set-Based Methods. PLoS One 8 (8), p. e68124 (2013)

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Journal Article

Bordás, R.; Roloff, C.; Thévenin, D.; Shaw, R.A.: Experimental determination of droplet collision rates in turbulence. New Journal of Physics 15, pp. 1 - 31 (2013)

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Fiorini, S.; Kaibel, V.; Pashkovich, K.; Theis, D. O.: Combinatorial bounds on nonnegative rank and extended formulations. Discrete Mathematics 313 (1), pp. 67 - 83 (2013)

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Freund, S.; Rath, A.; Barradas, O. P.; Skerhutt, S.; Scholz, S.; Niklas, J.; Sandig, V.; Rose, T.; Heinzle, E.; Noll, T. et al.; Pörtner, R.; Zeng, A. P.; Reichl, U.: Batch-to-batch variability of two human designer cell lines - AGE1.HN and AGE1.HN.AAT - carried out by different laboratories under defined culture conditions using a mathematical model. Engineering in Life Sciences 13 (6), pp. 580 - 592 (2013)

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Journal Article

Holstein, K.; Flockerzi, D.; Conradi, C.: Multistationarity in Sequential Distributed Multisite Phosphorylation Networks. Bulletin of mathematical biology 75 (11), pp. 2028 - 2058 (2013)

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Janiga, G.; Berg, P.; Beuing, O.; Neugebauer, M.; Gasteiger, R.; Preim, B.; Rose, G.; Skalej, M.; Thévenin, D.: Recommendations for Accurate Numerical Blood Flow Simulations of Stented Intracranial Aneurysms. Biomedizinische Technik 58 (3), pp. 303 - 314 (2013)

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Journal Article

Javeed, S.; Qamar, S.; Ashraf, W.; Warnecke, G.; Seidel-Morgenstern, A.: Analysis and numerical investigation of two dynamic models for liquid chromatography. Chemical Engineering Science 90, pp. 17 - 31 (2013)

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Journal Article

Kirsch, S.; Hanke-Rauschenbach, R.; Stein, B.; Kraume, R.; Sundmacher, K.: The Electro-Oxidation of H₂, CO in a Model PEM Fuel Cell: Oscillations, Chaos, Pulses. Journal of the Electrochemical Society 160 (4), pp. F436 - F446 (2013)

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Journal Article

Medeiros de Souza, L. G.; Haida, H.; Thévenin, D.; Seidel-Morgenstern, A.; Janiga, G.: Model selection and parameter estimation for chemical reactions using global model structure. Computers and Chemical Engineering 58, pp. 269 - 277 (2013)

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Journal Article

Müller, T.; Dürr, R.; Isken, B.; Schulze-Horsel, J.; Reichl, U.; Kienle, A.: Distributed modeling of human influenza a virus-host cell interactions during vaccine production. Biotechnology and Bioengineering 110 (8), pp. 2252 - 2266 (2013)

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Journal Article

Neugebauer, M.; Lawonn, K.; Beuing, O.; Berg, P.; Janiga, G.; Preim, B.: AmniVis - A System for Qualitative Exploration of Near-Wall Hemodynamics in Cerebral Aneurysms. Computer Graphics Forum 32 (3), pp. 251 - 260 (2013)

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Journal Article

Okiro, J.; Manyonge, A. W.; Ongati, N. O.; Shichikha, J. M.; Kimaiyo, J. K.: On the Solution of Confined Aquifer Flow Equations: Finite Difference Approximations. Applied Mathematical Sciences 7 (58), pp. 2885 - 2896 (2013)

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Journal Article

Rätzel, V.; Ebeling, B.; Hoffmann, X.-K.; Tesmer, J.; Marwan, W.: Physarumpolycephalum mutants in the photocontrol of sporulation display altered patterns in the correlated expression of developmentally regulated genes. Development Growth & Differentiation 55, pp. 247 - 259 (2013)

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Journal Article

Roloff, C.; Bordás , R.; Nickl, R.; Mátrai, Z.; Szaszák, .; Szilárd, S.; Thévenin, D.: Investigation of the velocity field in a full-scale model of a cerebral aneurysm. International Journal of Heat and Fluid Flow 43, pp. 212 - 219 (2013)

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Journal Article

Roloff, C.; Bordás, R.; Nickl, R.; Mátrai, Z.; Szaszák, N.; Szilárd, S.; Thévenin, D.: Investigation of the velocity field in a full-scale model of a cerebral aneurysm. International Journal of Heat and Fluid Flow 43, pp. 212 - 219 (2013)

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Journal Article

Sreedhar, B.; Wagler, A.; Kaspereit, M.; Seidel-Morgenstern, A.: Optimal cut-times finding strategies for collecting a target component from overloaded elution chromatograms. Computers and Chemical Engineering 49 (11), pp. 158 - 169 (2013)

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Journal Article

Steinman, D. A.; Hoi, Y.; Fahy, P.; Morris, L.; Walsh, M. T.; Aristokleous, N.; Anayiotos, A. S.; Papaharilaou, Y.; Arzani, A.; Shadden, S. C. et al.; Berg, P.; Janiga, G.; Bols, J.; Segers, P.; Bressloff, N. W.; Cibis, M.; Gijsen, F. H.; Cito, S.; Pallarés, J.; Browne, L. D.; Costelloe, J. A.; Lynch, A. G.; Degroote, J.; Vierendeels, J.; Fu, W.; Qiao, A.; Hodis, S.; Kallmes, D. F.; Kalsi, H.; Long, Q.; Kheyfets, V. O.; Finol, E. A.; Kono, K.; Malek, A. M.; Lauric, A.; Menon, P. G.; Pekkan, K.; Moghadam, M. E.; Marsden, A. L.; Oshima, M.; Katagiri, K.; Peiffer, V.; Mohamied, Y.; Sherwin, S. J.; Schaller, J.; Goubergrits, L.; Usera, G.; Mendina, M.; Valen-Sendstad, K.; Habets, D. F.; Xiang, J.; Meng, H.; Yu, Y.; Karniadakis, G. E.; Shaffer, N.; Loth, F.: Variability of computational fluid dynamics solutions for pressure and flow in a giant aneurysm: the ASME 2012 Summer Bioengineering Conference CFD Challenge. Journal of Biomechanical Engineering-Transactions of the American Society of the Mechanical Engineers 135 (2), pp. 021016-1 - 021016-13 (2013)

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Journal Article

Swernath, S.; Kaspereit, M.; Kienle, A.: Dynamics and Control of Coupled Continuous Chromatography and Crystallization Processes for the Production of Pure Enantiomers. Chemical Engineering and Technology 36 (8), pp. 1417 - 1429 (2013)

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Journal Article

Temmel, E.; Wloch, S.; Müller, U.; Grawe, D.; Eilers, R.; Lorenz, H.; Seidel-Morgenstern, A.: Aufreinigung durch mehrstufige Gegenstromkristallisation zur Herstellung hochreiner Pharmazeutika. Chemie-Ingenieur-Technik 85 (10), pp. 1581 - 1588 (2013)

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Temmel, E.; Wloch, S.; Müller, U.; Grawe, D.; Eilers, R.; Lorenz, H.; Seidel-Morgenstern, A.: Separation of systems forming solid solutions using counter-current crystallization. Chemical Engineering Science 104, pp. 662 - 673 (2013)

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Journal Article

Vidaković-Koch, T.; Mittal, V. K.; Varničić, M.; Do Thi, Q. N.; Sundmacher, K.: Application of electrochemical impedance spectroscopy for studying of enzyme kinetics. Electrochimica Acta 110 , pp. 94 - 104 (2013)

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Journal Article

Walter, P.; Hoffmann, X.-K.; Ebeling, B.; Haas, M.; Marwan, W.: Switch-like reprogramming of gene expression after fusion of multinucleate plasmodial cells of two Physarum polycephalum sporulation mutants. Biochemical and Biophysical Research Communications 435 (1), pp. 88 - 93 (2013)

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Journal Article

Ye, K.; Freund, H.; Sundmacher, K.: A New Process for Azeotropic Mixture Separation by Phase Behavior Tuning Using Pressurized Carbon Dioxide. Industrial and Engineering Chemistry Research 52 (43), pp. 15154 - 15164 (2013)

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2012

Journal Article

Barrantes Bustinza, I. W.; Leipzig, J.; Marwan, W.: A Next-Generation Sequencing Approach to Study the Transcriptomic Changes During the Differentiation of Physarum at the Single-Cell Level. Gene Regulation and Systems Biology 6, pp. 127 - 137 (2012)

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Journal Article

Benner, P.; Breiten, T.: Interpolation-Based H₂-Model Reduction of Bilinear Control Systems. SIAM Journal on Matrix Analysis and Applications 33 (3), pp. 859 - 885 (2012)

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publisher-version

Journal Article

Benner, P.; Sima, V.; Voigt, M.: L_∞-Norm Computation for Continuous-Time Descriptor Systems Using Structured Matrix Pencils. IEEE Transactions on Automatic Control 57 (1), pp. 233 - 238 (2012)

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Journal Article

Bordás, R.; Seshadhri, S.; Janiga, G.; Skalej, M.; Thévenin, D.: Experimental validation of numerical simulations on a cerebral aneurysm phantom model. Interventional Medicine and Applied Science 4 (4), pp. 193 - 205 (2012)

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Journal Article

Chittipotula, T.; Janiga, G.; Thevenin, D.: Optimizing soot prediction models for turbulent non-premixed ethylene/air flames. Chemical Engineering Science 70, pp. 67 - 76 (2012)

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Journal Article

Haus, U.-U.; Pfeuffer, F.: Split cuts for robust mixed-integer optimization. Operations Research Letters 40 (3), pp. 165 - 171 (2012)

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Journal Article

Javeed, S.; Qamar, S.; Seidel-Morgenstern, A.; Warnecke, G.: Parametric study of thermal effects in reactive liquid chromatography. Chemical Engineering Journal 191, pp. 426 - 440 (2012)

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Journal Article

Kaspereit, M.; Swernath, S.; Kienle, A.: Evaluation of Competing Process Concepts for the Production of Pure Enantiomers. Organic Process Research & Development 16 (2), pp. 353 - 363 (2012)

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Journal Article

Krauss, M.; Schaller, S.; Borchers, S.; Findeisen, R.; Lippert, J.; Kuepfer, L.: Integrating Cellular Metabolism into a Multiscale Whole-Body Model. PLoS Computational Biology 8 (10), e1002750 (2012)

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Journal Article

Le Minh, T.; Lorenz, H.; Seidel-Morgenstern, A.: Enantioselective Crystallization Exploiting the Shift of Eutectic Compositions in Solid-Liquid Phase Diagrams. Chemical Engineering and Technology 35 (6), pp. 1003 - 1008 (2012)

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Journal Article

Pandey, R.; Flockerzi, D.; Hauser, M. J. B.; Straube, R.: An extended model for the repression of photosynthesis genes by the AppA/PpsR system in Rhodobacter sphaeroides. FEBS Journal 279 (18), pp. 3449 - 3461 (2012)

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Paramasivan, G.; Kienle, A.: Decentralized control system design under uncertainty using mixed-integer optimization. Chemical Engineering and Technology 35 (2), pp. 261 - 271 (2012)

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Journal Article

Paramasivan, G.; Kienle, A.: Decentralized Control System Design for a Ternary Reactive Distillation with Inert Using Mixed Integer optimization. Chemical Engineering and Technology 35 (9), pp. 1609 - 1616 (2012)

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Journal Article

Peschel, A.; Hentschel, B.; Freund, H.; Sundmacher, K.: Design of optimal multiphase reactors exemplified on the hydroformylation of long chain alkenes. Chemical Engineering Journal 188, pp. 126 - 141 (2012)

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Journal Article

Peschel, A.; Jörke, A.; Sundmacher, K.; Freund, H.: Optimal Reaction Concept and Plant Wide Optimization of the Ethylene Oxide Process. Chemical Engineering Journal 207–208, pp. 656 - 674 (2012)

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Platas Barradas, O.; Jandt, U.; Da Minh Phan, L.; Villanueva, M. E.; Schaletzky, M.; Rath, A.; Freund, S.; Reichl, U.; Skerhutt, E.; Scholz, S. et al.; Noll, T.; Sandig, V.; Pörtner, R.; Zeng, A.-P.: Evaluation of criteria for bioreactor comparison and operation standardization for mammalian cell culture. Engineering in Life Sciences 12 (5), pp. 518 - 528 (2012)

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Journal Article

Rumschinski, P.; Streif, S.; Findeisen, R.: Combining qualitative information and semi‐quantitative data for guaranteed invalidation of biochemical network models. International Journal of Robust and Nonlinear Control 22 (10), pp. 1157 - 1173 (2012)

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Journal Article (353)