Publications of E. D. Gilles

Journal Article (181)

2004
Journal Article
Kremling, A., Kremling, S., Sauter, T., Bettenbrock, K., & Gilles, E. D. (2004)Time hierarchies in the Escherichia coli carbohydrate uptake and metabolismBiosystems, 73 (1), 57–71doi: 10.1016/j.biosystems.2003.09.001.
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Mangold, M., Ginkel, M., & Gilles, E. D. (2004)A model library for membrane reactors implemented in the process modelling tool ProMoTComputers and Chemical Engineering, 28 (3), 319–332doi: 10.1016/S0098-1354(03)00189-3.
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Motz, S., Mannal, S., & Gilles, E. D. (2004)Integral approximation: an approach to reduced models for particulate processesChemical Engineering Science, 59 (5), 987–1000doi: 10.1016/j.ces.2003.08.027.
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Saez-Rodriguez, J., Kremling, A., Conzelmann, H., Bettenbrock, K., & Gilles, E. D. (2004)Modular Analysis of Signal Transduction NetworksIEEE Control Systems Magazine, 24 (4), 35–52doi: 10.1109/MCS.2004.1316652.
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Schmid, J. W., Mauch, K., Reuss, M., Gilles, E. D., & Kremling, A. (2004)Metabolic design based on a coupled gene expression-metabolic network model of tryptophan production in Escherichia coliMetabolic Engineering, 6 (4), 364–377doi: 10.1016/j.ymben.2004.06.003.
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Stelling, J. & Gilles, E. D. (2004)Mathematical Modeling of Complex Regulatory NetworksIEEE Transactions on Nanobioscience, 3 (3), 172–179doi: 10.1109/TNB.2004.833688.
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Stelling, J., Gilles, E. D., & Doyle III, F. J. (2004)Robustness properties of circadian clock architecturesProceedings of the National Academy of Sciences U.S.A., 101 (36), 13210–13215doi: 10.1073/pnas.0401463101.
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2003
Journal Article
Ederer, M., Sauter, T., Bullinger, E., Gilles, E. D., & Allgöwer, F. (2003)An approach for dividing models of biological reaction networks into functional unitsSimulation: Transactions of the Society for Modeling and Simulation, 79 (12), 703–716doi: 10.1177/0037549703040940.
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Ginkel, M., Kremling, A., Nutsch, T., Rehner, R., & Gilles, E. D. (2003)Modular modeling of cellular systems with ProMoT/DivaBioinformatics, 19, 1169–1176doi: 10.1093/bioinformatics/btg128.
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Grammel, H., Gilles, E. D., & Ghosh, R. (2003)Microaerophilic cooperation of reductive and oxidative pathways allows maximal photosynthetic membrane biosynthesis in Rhodospirillum rubrumApplied and Environmental Microbiology, 69 (11), 6577–6586doi: 10.1128/AEM.69.11.6577-6586.2003.
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Grüner, S., Mohl, K. D., Kienle, A., Gilles, E. D., Fernholz, G., & Friedrich, M. (2003)Nonlinear control of a reactive distillation columnControl Engineering Practice, 11 (8), 915–925doi: 10.1016/S0967-0661(02)00211-3.
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Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J. H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novere, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., & Wang, J. (2003)The systems biology markup language (SBML): a medium for representation and exchange of biochemical network modelsBioinformatics, 19 (4), 524–531doi: 10.1093/bioinformatics/btg015.
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Klamt, S., Stelling, J., Ginkel, M., & Gilles, E. D. (2003)FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux mapsBioinformatics, 19 (2), 261–269doi: 10.1093/bioinformatics/19.2.261.
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Motz, S., Mitrovic, A., Gilles, E. D., Vollmer, U., & Raisch, J. (2003)Modeling, simulation and stabilizing H∞-control of an oscillating continuous crystallizer with fines dissolutionChemical Engineering Science, 58 (15), 3473–3488doi: 10.1016/S0009-2509(03)00199-4.
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Nutsch, T., Marwan, W., Oesterhelt, D., & Gilles, E. D. (2003)Signal processing and flagellar motor switching during phototaxis of Halobacterium salinarumGenome Research, 13 (11), 2406–2412doi: 10.1101/gr.1241903.
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2002
Journal Article
Gilles, E. D. (2002)Regelung – Schlüssel zum Verständnis biologischer Systemeat - Automatisierungstechnik, 50 (1), 7–17doi: 10.1524/auto.2002.50.1.007.
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Klamt, S., Schuster, S., & Gilles, E. D. (2002)Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteriaBiotechnology and Bioengineering, 77 (7), 734–751doi: 10.1002/bit.10153.
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Mangold, M., Motz, S., & Gilles, E. D. (2002)A network theory for the structured modelling of chemical processesChemical Engineering Science, 57 (19), 4099–4116doi: 10.1016/S0009-2509(02)00372-X.
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Schoeberl, B., Eichler-Jonsson, C., Gilles, E. D., & Müller, G. (2002)Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptorsNature Biotechnology, 20 (4), 370–375doi: 10.1038/nbt0402-370.
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Stelling, J., Klamt, S., Bettenbrock, K., Schuster, S., & Gilles, E. D. (2002)Metabolic network structure determines key aspects of functionality and regulationNature, 420 (6912), 190–193doi: 10.1038/nature01166.
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