Publications of Dirk Benndorf
All genres
Journal Article (51)
1.
Journal Article
259, 104544 (2022)
Absolute quantification of viral proteins during single-round replication of MDCK suspension cells. Journal of Proteomics 2.
Journal Article
21 (4), pp. 1175 - 1180 (2022)
Pout2Prot: An Efficient Tool to Create Protein (Sub)groups from Percolator Output Files. Journal of Proteome Research 3.
Journal Article
10 (5), 978 (2022)
Lignocellulose Fermentation Products Generated by Giant Panda Gut Microbiomes Depend Ultimately on pH Rather than Portion of Bamboo: A Preliminary Study. Microorganisms 4.
Journal Article
49 (15), e89 (2021)
smORFer: a modular algorithm to detect small ORFs in prokaryotes. Nucleic Acids Research (London) 5.
Journal Article
160, 108331 (2021)
Structure and function of bacterial metaproteomes across biomes. Soil Biology and Biochemistry 6.
Journal Article
11 (5), 726 (2021)
Fecal Metaproteomics Reveals Reduced Gut Inflammation and Changed Microbial Metabolism Following Lifestyle-Induced Weight Loss. Biomolecules 7.
Journal Article
202 (1), 117422 (2021)
Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles. Water Research 8.
Journal Article
9 (7), 1457 (2021)
Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants. Microorganisms 9.
Journal Article
105 (1), pp. 129 - 146 (2021)
OP7, a novel influenza A virus defective interfering particle: production, purification, and animal experiments demonstrating antiviral potential. Applied Microbiology and Biotechnology 10.
Journal Article
13 (17), 9505 (2021)
Integrated Cycles for Urban Biomass as a Strategy to Promote a CO2-Neutral Society—A Feasibility Study. Sustainability 11.
Journal Article
237, 104147 (2021)
The structure and function of soil archaea across biomes. Journal of Proteomics 12.
Journal Article
9 (1), 243 (2021)
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome 13.
Journal Article
12 (1), 7305 (2021)
Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows. Nature Communications 14.
Journal Article
22 (20), 10992 (2021)
MPA_Pathway_Tool: User-Friendly, Automatic Assignment of Microbial Community Data on Metabolic Pathways. International Journal of Molecular Sciences 15.
Journal Article
314, 123679 (2020)
Impact of feeding and stirring regimes on the internal stratification of microbial communities in the fermenter of anaerobic digestion plants. Bioresource Technology 16.
Journal Article
8 (12), 2024 (2020)
The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses. Microorganisms 17.
Journal Article
15, pp. 3212 - 3239 (2020)
A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane. Nature Protocols 18.
Journal Article
11, 233 (2020)
The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12. Frontiers in Microbiology 19.
Journal Article
11, 530 (2020)
Substrate-Dependent Fermentation of Bamboo in Giant Panda Gut Microbiomes: Leaf Primarily to Ethanol and Pith to Lactate. Frontiers in Microbiology 20.
Journal Article
19 (8), pp. 3562 - 3566 (2020)
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis. Journal of Proteome Research