Franke, R.; Mueller, M.; Wundrack, N.; Gilles, E. D.; Klamt, S.; Kaehne, T.; Naumann, M.: Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction. BMC Systems Biology 2, 4 (2008)

Gangadwala, J.; Radulescu, G.; Kienle, A.; Steyer, F.; Sundmacher, K.: New processes for recovery of acetic acid from waste water. Clean Technology & Environmental Policy 3, pp. 245 - 254 (2008)

Glöckner, G.; Golderer, G.; Werner-Felmayer, G.; Meyer, S.; Marwan, W.: A first glimpse at the transcriptome of Physarum polycephalum. BMC Genomics 9, 6 (2008)

Heidebrecht, P.; Hertel, C.; Sundmacher, K.: Conceptual Analysis of a Cyclic Water Gas Shift Reactor. International Journal of Chemical Reactor Engineering 6, p. A 19 (2008)

Klamt, S.; Grammel, H.; Straube, R.; Ghosh, R.; Gilles, E. D.: Modeling the electron transport chain of purple non-sulfur bacteria. Molecular Systems Biology 4, 156 (2008)

Koschorreck, M.; Gilles, E. D.: Mathematical modeling and analysis of insulin clearance in vivo. BMC Systems Biology 2, 43 (2008)

Koschorreck, M.; Gilles, E. D.: ALC: automated reduction of rule-based models. BMC Systems Biology 2, 91 (2008)

Kremling, A.: Modellierung und Modellanalyse in der Systembiologie am Beispiel der Kohlenhydrataufnahme bei Escherichia coli. at - Automatisierungstechnik 56 (5), pp. 250 - 256 (2008)

Lu, H.; Rihko-Struckmann, L.; Hanke-Rauschenbach, R.; Sundmacher, K.: Dynamic Behavior of a PEM Fuel Cell during Electrochemical CO Oxidation on a PtRu Anode. Topics in Catalysis 51, pp. 89 - 97 (2008)

Reger, J.; Jouffroy, J.: Algebraische Ableitungsschätzung im Kontext der Rekonstruierbarkeit. at - Automatisierungstechnik 6 (56), pp. 324 - 331 (2008)

Schulze-Horsel, J.; Genzel, Y.; Reichl, U.: Flow cytometric monitoring of influenza A virus infection in MDCK cells during vaccine production. BMC Biotechnology 8, 45 (2008)

Sewekow, E.; Keßler, L. C.; Seidel-Morgenstern, A.; Rothkoetter, H.-J.: Isolation of soy bean protein P34 from oil bodies using hydrophobic interaction chromatography. BMC Biotechnology 8, 27 (2008)

Wahl, S. A.; Nöh, K.; Wiechert, W.: 13C labeling experiments at metabolic nonstationary conditions: an exploratory study. BMC Bioinformatics 9, 152 (2008)

Beste, D. J.; Hooper, T.; Stewart, G.; Bonde, B.; Avignone-Rossa, C.; Bushell, M. E.; Wheeler, P.; Klamt, S.; Kierzek, A. M.; McFadden, J.: GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. Genome Biology 8, R89 (2007)

Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)

Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)

Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)

Lorenz, H.; Czapla, F.; Polenske, D.; Elsner, M. P.; Seidel-Morgenstern, A.: Crystallization based separation of enantiomers (Review). Journal of the University of Chemical Technology and Metallurgy 42 (1), pp. 5 - 16 (2007)

Noack, S.; Wahl, A.; Qeli, E.; Wiechert, W.: Visualizing Regulatory Interactions in Metabolic Networks. BMC Biology 5, p. 46 (2007)

Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)

Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7, 34 (2006)

Klamt, S.; Saez-Rodriguez, J.; Lindquist, J.; Simeoni, L.; Gilles, E. D.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7, p. 56 (2006)

Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)

Elsner, M. P.; Fernandez Menendez, D.; Alonso Muslera, E.; Seidel-Morgenstern, A.: Experimental Study and Simplified Mathematical Description of Preferential Crystallization. Chirality 17 (S1), pp. S183 - S195 (2005)

Schauer, T.; Salbert, R. C.; Negard, N.-O.; Hunt, K. J.; Raisch, J.: Belastungsregelung bei der Elektrostimulationsergometrie. at-Automatisierungstechnik 53 (12), pp. 607 - 614 (2005)

Seidel-Morgenstern, A.: Preparative gradient chromatography. Chemical Engineering and Technology 28 (11), pp. 1265 - 1273 (2005)

Shan, Y.; Seidel-Morgenstern, A.: Isolation of a target component from a multicomponent mixture by coupling batch and continuous countercurrent chromatography. Chemical Engineering and Technology 28 (6), pp. 695 - 704 (2005)

Thomas, S.; Klose, F.; Seidel-Morgenstern, A.: Ausbeutesteigerung mittels Membranreaktoren bei Parallel- und Folgereaktionen. Chemie-Ingenieur-Technik 77 (12), pp. 1901 - 1909 (2005)

Chen, G.; Paces, M.; Marek, M.; Zhang, Y.; Seidel-Morgenstern, A.; Tallarek, U.: Dynamics of Capillary Electrochromatography: Experimental Study of Flow and Transport in Particulate Beds. Chemical Engineering and Technology 27, pp. 417 - 428 (2004)

Gagneur, J.; Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 5, 175 (2004)

Kenig, E. Y.; Pyhälahti, A.; Jakobsson, K.; Górak, A.; Aittamaa, J.; Sundmacher, K.: Advanced Rate-Based Simulation Tool for Reactive Distillation. AIChE Journal 50, pp. 322 - 342 (2004)

Mangold, M.; Sheng, M.: Nonlinear model reduction of a two-dimensional MCFC model with internal reforming. Fuel Cells: from Fundamentals to Systems 4, pp. 68 - 77 (2004)

Qi, Z.; Flockerzi, D.; Sundmacher, K.: Singular Points of Reactive Distillation Systems. AIChE Journal 50, pp. 2866 - 2876 (2004)

Sosa, N.; Kremling, A.; Ratsch, E.; Rojas, I.: Web-based visualisation of the transcriptional control network of Escherichia coli. In Silico Biology 4 (4), pp. 507 - 515 (2004)

Hanke, R.; Hannemann, F.; Sundmacher, K.: Dynamic simulation of a low-temperature rectification column as part of an IGCC power plant. Chemical Engineering & Technology 26, pp. 1126 - 1130 (2003)

Schramm, H.; Kaspereit, M.; Kienle, A.; Seidel-Morgenstern, A.: Verbesserter Betrieb von Simulated Moving Bed-Prozessen durch zyklische Modulation der Feedkonzentration. Chemie-Ingenieur-Technik 75 (4), pp. 379 - 383 (2003)

Kraume, M.; Enders, S.; Drews, A.; Schomäcker, R.; Engell, S.; Sundmacher, K. (Eds.): Integrated Chemical Processes in Liquid Multiphase Systems: from Chemical Reaction to Process Design and Operation. De Gruyter, Berlin/Boston (2022), 622 pp.

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M. (Eds.): Model Order Reduction: Volume I: System- and Data-Driven Methods and Algorithms. De Gruyter, Berlin, Boston (2021)

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M. (Eds.): Model Order Reduction - Volume 2: Snapshot-Based Methods and Algorithms. De Gruyter, Berlin, Boston (2021)

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M. (Eds.): Model Order Reduction: Volume 3: Applications. De Gruyter, Berlin, Boston (2021)

Lorenz, H.; Temmel, E. (Eds.): Advances in Industrial Crystallization. MDPI, Basel, Switzerland (2021), 258 pp.

Vettermann, J.; Aumann, Q.; Saak, J.; Benner, P.: Rechenzeitsparende Modellierung. In: Thermo-energetische Gestaltung von Werkzeugmaschinen, pp. 199 - 212 (Ed. Brecher, C.). Springer Vieweg, Wiesbaden (2025)

Beddig, R. S.; Benner, P.; Dorschky, I.; Reis, T.; Schwerdtner, P.; Voigt, M.; Werner, S. W.R.: Structure-Preserving Model Reduction for Dissipative Mechanical Systems. In: Calm, Smooth and Smart: Novel Approaches for Influencing Vibrations by Means of Deliberately Introduced Dissipation, pp. 209 - 230 (Ed. Eberhard, P.). Springer, Cham (2024)

Gosea, I. V.; Peterson, L.; Goyal, P. K.; Bremer, J.; Sundmacher, K.; Benner, P.: Learning Reduced-Order Quadratic-Linear Models in Process Engineering using Operator Inference. In: ENUMATH 2023 Proceedings (accepted)

Karachalios, D.; Gosea, I. V.; Kour, K.; Antoulas, A. C.: Bilinear realization from input-output data with neural networks. In: Scientific Computing in Electrical Engineering: SCEE 2022, Amsterdam, The Netherlands, July 2022, pp. 184 - 192 (Eds. van Beurden, M.; Budko, N. V.; Ciuprina, G.; Schilders, W.; Bansal, H. et al.). Springer, Cham (2024)

Aumann, Q.; Benner, P.; Saak, J.; Vettermann, J.: Model Order Reduction Strategies for the Computation of Compact Machine Tool Models. In: 3rd International Conference on Thermal Issues in Machine Tools (ICTIMT2023), pp. 132 - 145 (Ed. Ihlenfeldt, S.). Springer International Publishing, Cham (2023)

Chellappa, S.; Feng, L.; Benner, P.: An Adaptive Sampling Approach for the Reduced Basis Method. In: Realization and Model Reduction of Dynamical Systems – A Festschrift in Honor of 70th Birthday of Thanos Antoulas, pp. 137 - 155 (Eds. Beattie, C.; Benner, P.; Embree, M.; Gugercin, S.; Lefteriu, S.). Springer International Publishing, Cham (2022)

Gosea, I. V.; Poussot-Vassal, C.; Antoulas, A. C.: Data-driven modeling and control of large-scale dynamical systems in the Loewner framework: Methodology and applications. In: Numerical Control: Part A, pp. 499 - 530 (Eds. Trélat, E.; Zuazua, E.). Elsevier (2022)

Himpe, C.; Grundel, S.; Benner, P.: Next-Gen Gas Network Simulation. In: Progress in Industrial Mathematics at ECMI 2021, pp. 107 - 113 (Eds. Ehrhardt, M.; Günther, M.). Springer, Cham, Switzerland (2022)

Pontes Duff, I.; Goyal, P. K.; Benner, P.: Data-Driven Identification of Rayleigh-Damped Second-Order Systems. In: Realization and Model Reduction of Dynamical Systems - A Festschrift in Honor of 70th Birthday of Thanos Antoulas, pp. 255 - 272 (Eds. Beattie, C.; Benner, P.; Embree, M.; Gugercin, S.; Lefteriu, S.). Springer International Publishing, Cham (2022)