Publications of Wolfgang Marwan

Marwan, W., Wagler, A., & Weismantel, R. (2011)Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networksNatural Computing, 10 (2), 639–654doi: 10.1007/s11047-009-9152-x.

Barrantes Bustinza, I. W., Glockner, G., Meyer, S., & Marwan, W. (2010)Transcriptomic changes arising during light-induced sporulation in Physarum polycephalumBMC Genomics, 11, 115doi: 10.1186/1471-2164-11-115.

Rohr, C., Marwan, W., & Heiner, M. (2010)Snoopy - a unifying Petri net framework to investigate biomolecular networksBioinformatics, 26 (7), 974–975doi: 10.1093/bioinformatics/btq050.

Streif, S., Oesterhelt, D., & Marwan, W. (2010)A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxisBMC Systems Biology, 4, 27doi: 10.1186/1752-0509-4-27.

Streif, S., Staudinger, W., Oesterhelt, D., & Marwan, W. (2009)Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based trackingReview of Scientific Instruments, 80, 023709doi: 10.1063/1.3076408.

Glöckner, G., Golderer, G., Werner-Felmayer, G., Meyer, S., & Marwan, W. (2008)A first glimpse at the transcriptome of Physarum polycephalumBMC Genomics, 9, 6doi: 10.1186/1471-2164-9-6.

Streif, S., Staudinger, W., Marwan, W., & Oesterhelt, D. (2008)Flagellar Rotation in the Archaeon Halobacterium salinarum Depends on ATPJournal of Molecular Biology, 384 (1), 1–8doi: 10.1016/j.jmb.2008.08.057.

Blätke, M. A., Heiner, M., & Marwan, W. (2015)BioModel Engineering with Petri NetsAlgebraic and Discrete Mathematical Methods for Modern Biology141–192San Diego, USA: Elsevierdoi: 10.1016/B978-0-12-801213-0.00007-1.

Blätke, M. A., Meyer, S., & Marwan, W. (2011)Pain Signaling - A Case Study of the Modular Modeling Voncept with Prospect to a Protein-Oriented Modeling PlatformIn: Proceedings of the International Workshop on Biological Processes & Petri Nets, 117–134.

Blätke, M. A. & Marwan, W. (2010)Modular and hierarchical modelling concept for large biological Petri nets applied to nociceptionIn: Proceedings of the 17th German Workshop on Algorithms and Tools for Petri Nets, 42–50.

Nutsch, T., Marwan, W., Oesterhelt, D., & Gilles, E. D. (2004)A coherent kinetic model of sensing and response in halobacterium salinarium phototaxis based on the mechanism of flagellar motor switchingIn: Bioinformatics of genome regulation and structure, 113–116.

Rohr, C., Heiner, M., & Marwan, W.Petri net modeling of cellular signal transduction based on a stochastic version of SnoopyPresented at: The 6th Conference on Computational Methods in Systems BiologyRostock, Germany, October 12, 2008.