Publications of Mary Ann Blätke

Liu, F., Blätke, M. A., Heiner, M., & Ming, Y. (2014)Modelling and simulating reaction–diffusion systems using coloured Petri netsComputers in Biology and Medicine (Elmsford, NY), 53, 297–308doi: 10.1016/j.compbiomed.2014.07.004.

Blätke, M. A., Dittrich, A., Rohr, C., Heiner, M., Schaper, F., & Marwan, W. (2013)JAK/STAT signalling – an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biologyMolecular BioSystems, 9 (6), 1290–1307doi: 10.1039/C3MB25593J.

Blätke, M. A., Heiner, M., & Marwan, W. (2015)BioModel Engineering with Petri NetsAlgebraic and Discrete Mathematical Methods for Modern Biology141–192San Diego, USA: Elsevierdoi: 10.1016/B978-0-12-801213-0.00007-1.

Blätke, M. A., Rohr, C., Heiner, M., & Marwan, W. (2014)A Petri-Net-Based Framework for Biomodel EngineeringLarge-Scale Networks in Engineering and Life Sciences317–366Cham: Springer International Publishingdoi: 10.1007/978-3-319-08437-4_6.

Beccuti, M., Blätke, M. A., Falk, M., Hardy, S., Heiner, M., Maus, C., Nähring, C., & Rohr, C. (2015)Dictyostelium discoideum: Aggregation and Synchronisation of Amoebas in Time and SpaceIn: Dagstuhl Reports, 195–214.

Blätke, M. A. & Rohr, C. (2015)A coloured Petri net approach for spatial Biomodel Engineering based on the modular model composition framework BiomodelkitIn: Proceedings of the 6th International Workshop on Biological Processes & Petri Nets co-located with 36th International Conference on Application and Theory of Petri Nets and Concurreny (PETRI NETS 2015), 37–54.

Marwan, W. & Blätke, M. A. (2013)A module-based approach to biomodel engineering with Petri NetsIn: Proceedings of the 2012 Winter Simulation Conference (WSC), 1–12doi: 10.1109/WSC.2012.6465259.

Blätke, M. A., Dittrich, A., Heiner, M., Schaper, F., & Marwan, W. (2012)JAK-STAT signalling as example for a database-supported modular modelling conceptIn: Computational Methods in Systems Biology. Lecture Notes in Computer Science, 362–365doi: 10.1007/978-3-642-33636-2_21.

Blätke, M. A., Heiner, M., & Marwan, W. (2012)Predicting phenotype from genotype through automatically composed Petri netsIn: Computational Methods in Systems Biology. Lecture Notes in Computer Science, 87–106doi: 10.1007/978-3-642-33636-2_7.

Blätke, M. A., Meyer, S., & Marwan, W. (2011)Pain Signaling - A Case Study of the Modular Modeling Voncept with Prospect to a Protein-Oriented Modeling PlatformIn: Proceedings of the International Workshop on Biological Processes & Petri Nets, 117–134.

Blätke, M. A. & Marwan, W. (2010)Modular and hierarchical modelling concept for large biological Petri nets applied to nociceptionIn: Proceedings of the 17th German Workshop on Algorithms and Tools for Petri Nets, 42–50.

Blätke, M. A., Meyer, S., Stein, C., & Marwan, W. (2010)Petri net modeling via a modular and hierarchical approach applied to nociceptionIn: International Workshop on Biological Processes & Petri Nets (BioPPN), 131–143.

Blätke, M. A. & Marwan, W. (2012)A database-supported modular modelling platform for systems and synthetic biologyIn: Proceedings 3rd International Workshop on Biological Processes & Petri Nets (BioPPN), satellite event of Petri NETS, 18–19.

Blätke, M. A. & Rohr, C.A coloured Petri net approach for spatial Biomodel Engineering based on the modular model composition framework BiomodelkitPresented at: 6th International Workshop on Biological Processes & Petri Nets (BioPPN 2015)Brussels, Belgium , June 22, 2015.

Blätke, M. A.A Modular Framework for Biomodel EngineeringPresented at: Dagstuhl Seminar 14481 “Multiscale Spatial Computational Systems Biology”Wadern, Germany, November 23, 2014.

Blätke, M. A., Heiner, M., & Marwan, W.Predicting phenotype from genotype through automatically composed Petri netsPresented at: 10th International Conference on Computational Methods in Systems BiologyLondon, UK, October 3, 2012.

Blätke, M. A., Dittrich, A., Heiner, M., Schaper, F., & Marwan, W.JAK-STAT signalling as example for a database-supported modular modelling conceptPresented at: 10th International Conference on Computational Methods in Systems BiologyLondon, UK, October 3, 2012.

Blätke, M. A. (2017)Biomodelkit - a framework for modular biomodel-engineeringPhD Thesis, Otto-von-Guericke-Universität, Magdeburgdoi: 10.25673/4621.