Publications of Wolfgang Marwan

Marwan, W.; Wagler, A.; Weismantel, R.: Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks. Natural Computing 10 (2), pp. 639 - 654 (2011)

Barrantes Bustinza, I. W.; Glockner, G.; Meyer, S.; Marwan, W.: Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum. BMC Genomics 11, 115 (2010)

Rohr, C.; Marwan, W.; Heiner, M.: Snoopy - a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26 (7), pp. 974 - 975 (2010)

Streif, S.; Oesterhelt, D.; Marwan, W.: A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. BMC Systems Biology 4, 27 (2010)

Streif, S.; Staudinger, W.; Oesterhelt, D.; Marwan, W.: Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking. Review of Scientific Instruments 80, 023709 (2009)

Glöckner, G.; Golderer, G.; Werner-Felmayer, G.; Meyer, S.; Marwan, W.: A first glimpse at the transcriptome of Physarum polycephalum. BMC Genomics 9, 6 (2008)

Streif, S.; Staudinger, W.; Marwan, W.; Oesterhelt, D.: Flagellar Rotation in the Archaeon Halobacterium salinarum Depends on ATP. Journal of Molecular Biology 384 (1), pp. 1 - 8 (2008)

Blätke, M. A.; Heiner, M.; Marwan, W.: BioModel Engineering with Petri Nets. In: Algebraic and Discrete Mathematical Methods for Modern Biology, pp. 141 - 192. Elsevier, San Diego, USA (2015)

Blätke, M. A.; Meyer, S.; Marwan, W.: Pain Signaling - A Case Study of the Modular Modeling Voncept with Prospect to a Protein-Oriented Modeling Platform. In: Proceedings of the International Workshop on Biological Processes & Petri Nets, Vol. 724, pp. 117 - 134 (Eds. Heiner, M.; Hiroshi, M.). International Workshop on Biological Processes & Petri Nets (BioPPN-2011), Newcastle upon Tyne, UK, June 20, 2011 - June 24, 2011. (2011)

Blätke, M. A.; Marwan, W.: Modular and hierarchical modelling concept for large biological Petri nets applied to nociception. In: Proceedings of the 17th German Workshop on Algorithms and Tools for Petri Nets, Vol. 643, pp. 42 - 50 (Eds. Schwarick, M.; Heiner, M.). 17th German Workshop on Algorithms and Tools for Petri Nets (AWPN 2010), Cottbus, October 07, 2010 - October 08, 2010. (2010)

Nutsch, T.; Marwan, W.; Oesterhelt, D.; Gilles, E. D.: A coherent kinetic model of sensing and response in halobacterium salinarium phototaxis based on the mechanism of flagellar motor switching. In: Bioinformatics of genome regulation and structure, pp. 113 - 116. The Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004), Novosibirsk, Russia, July 25, 2004 - July 30, 2004. (2004)

Rohr, C.; Heiner, M.; Marwan, W.: Petri net modeling of cellular signal transduction based on a stochastic version of Snoopy. The 6th Conference on Computational Methods in Systems Biology, Rostock, Germany (2008)