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Journal Article (84)
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1.Journal ArticleBroadening the Scope of Enforced ATP Wasting as a Tool for Metabolic Engineering in Escherichia coli. (accepted)
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2.Journal ArticleComputergestütztes Design mikrobieller Zellfabriken. Biospektrum 25 (2), pp. 156 - 158 (2019)
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3.Journal ArticleRedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion. PLoS Computational Biology 15 (2), e1006759 (2019)
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4.Journal ArticleCharacterizing and Ranking Computed Metabolic Engineering Strategies. (accepted)
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5.Journal ArticleDesigning optimal experiments to discriminate interaction graph models. (accepted)
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6.Journal ArticleGeneralizing diffuse interface methods on graphs: non-smooth potentials and hypergraphs. SIAM Journal on Applied Mathematics 78 (3), pp. 1350 - 1377 (2018)
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7.Journal ArticleOptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. PLoS Computational Biology 14 (9), e1006492 (2018)
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8.Journal ArticleTemperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering 115 (1), pp. 156 - 164 (2018)
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9.Journal ArticleWhen do two-stage processes outperform one-stage processes? Biotechnology Journal 13 (2), 1700539 (2018)
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10.Journal ArticleA mathematical framework for yield (versus rate) optimization in constraint-based modeling and applications in metabolic engineering. Metabolic Engineering 47, pp. 153 - 169 (2018)
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11.Journal ArticleEstablishment of a five-enzyme cell-free cascade for the synthesis of uridine diphosphate N-acetylglucosamine. Journal of Biotechnology 283, pp. 120 - 129 (2018)
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12.Journal ArticleMoVE identifies metabolic valves to switch between phenotypic states. Nature Communications 9, 5332 (2018)
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13.Journal ArticleEColiCore2: a reference model of the central metabolism of Escherichia coli and the relationships to its genome-scale parent model. Scientific Reports 7, 39647 (2017)
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14.Journal ArticleGrowth-coupled overproduction is feasible for almost all metabolites in five major production organisms. Nature Communications 8, 15926 (2017)
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15.Journal ArticleUse of CellNetAnalyzer in biotechnology and metabolic engineering. Journal of Biotechnology 261, pp. 221 - 228 (2017)
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16.Journal ArticleFrom elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Computational Biology 13 (4), e1005409 (2017)
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17.Journal ArticleExact quantification of cellular robustness in genome-scale metabolic networks. Bioinformatics 32 (5), pp. 730 - 737 (2016)
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18.Journal ArticleModel-Based metabolic engineering enables high yield itaconic acid production by Escherichia coli. Metabolic Engineering 38, pp. 29 - 37 (2016)
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19.Journal ArticlePredicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Biotechnology for Biofuels 9, 17 (2016)
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20.Journal ArticleTRaCE+: Ensemble inference of gene regulatory networks from transcriptional expression profiles of gene knock-out experiments. BMC Bioinformatics 17 (17), 252 (2016)
