OA Publications of the Max Planck Institute

Max Planck Institute for Dynamics of Complex Technical Systems

Journal Article (1086)

2024

Journal Article

Espinel-Rios, S.; Behrendt, G.; Bauer, J.; Morabito, B.; Pohlodek, J.; Schütze, A.; Findeisen, R.; Bettenbrock, K.; Klamt, S.: Experimentally implemented dynamic optogenetic optimization of ATPase expression using knowledge-based and Gaussian-process-supported models. Process Biochemistry (143), pp. 174 - 185 (2024)

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Espinel-Rios, S.; Morabito, B.; Pohlodek, J.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Toward a modeling, optimization, and predictive control framework for fed-batch metabolic cybergenetics. Biotechnology and Bioengineering 121 (1), pp. 366 - 379 (2024)

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Feng, L.; Chellappa, S.; Benner, P.: A Posteriori Error Estimation for Model Order Reduction of Parametric Systems. Advanced Modeling and Simulation in Engineering Sciences 11, 5 (2024)

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Frohwitter, J.; Behrendt, G.; Klamt, S.; Bettenbrock, K.: A new Zymomonas mobilis platform strain for the efficient production of chemicals. Microbial Cell Factories 23, 143 (2024)

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Gänsch, J.; Oliynyk, K.; Potharaju, S.; Seidel-Morgenstern, A.; Lorenz, H.: Continuous Chiral Inversion by Coupling Enzymatic Racemization with Enantioselective Fluidized Bed Crystallization. Industrial & Engineering Chemistry Research 63, pp. 18525 - 18535 (2024)

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Geschke, A.; Zimmermann, R. T.; Bremer, J.; Sundmacher, K.: Core‐Shell Catalyst Pellets for CO2Methanation in a Pilot‐Scale Fixed‐Bed Reactor. Chemie Ingenieur Technik 96, pp. 1718 - 1725 (2024)

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Gkimisis, L.; Richter, T.; Benner, P.: Adjacency-based, Non-Intrusive Model Reduction for Vortex-Induced Vibrations. Computers & Fluids 275, 106248 (2024)

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Göbel, S.; Kazemi, O.; Ma, J.; Jordan, I.; Sandig, V.; Paulissen, J.; Kerstens, W.; Thibaut, H. J.; Reichl, U.; Dallmeier, K. et al.; Genzel, Y.: Parallel Multifactorial Process Optimization and Intensification for High-Yield Production of Live YF17D-Vectored Zika Vaccine. Vaccines 12 (7), 755 (2024)

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Göbel, S.; Pelz, L.; Silva, C. A. T.; Brühlmann, B.; Hill, C.; Altomonte, J.; Kamen, A.; Reichl, U.; Genzel, Y.: Production of recombinant vesicular stomatitis virus-based vectors by tangential flow depth filtration. Applied Microbiology and Biotechnology 108 (1), 240 (2024)

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Gosea, I. V.; Gugercin, S.; Werner, S. W. R.: Structured Barycentric Forms for Interpolation-Based Data-Driven Reduced Modeling of Second-Order Systems. Advances in Computational Mathematics 50, 26 (2024)

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Goyal, P. K.; Benner, P.: Generalized Quadratic-Embeddings for Nonlinear Dynamics using Deep Learning. Physica D: Nonlinear Phenomena 463, 134158 (2024)

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Goyal, P. K.; Peherstorfer, B.; Benner, P.: Rank-Minimizing and Structured Model Inference. SIAM Journal on Scientific Computing 46 (3), pp. A1879 - A1902 (2024)

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Goyal, P. K.; Pontes Duff, I.; Benner, P.: Dominant Subspaces of High-Fidelity Polynomial Structured Parametric Dynamical Systems and Model Reduction. Advances in Computational Mathematics 50, 42 (2024)

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Grundel, S.; Sarna, N.: Hyper-Reduction for Parametrized Transport Dominated Problems via Adaptive Reduced Meshes. Partial Differential Equations and Applications 5 (1), 3 (2024)

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Guzman Ruiz, L.; Zollner, A. M.; Hoxie, I.; Küchler, J.; Hausjell, C.; Mesurado, T.; Krammer, F.; Jungbauer, A.; Pereira Aguilar, P.; Klausberger, M. et al.; Grabherr, R.: Enhancing NA immunogenicity through novel VLP designs. Vaccine 42 (24), 126270 (2024)

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Heiland, J.; Yongho, K.: Convolutional Autoencoders, Clustering and POD for Low-dimensional Parametrization of Navier-Stokes Equations. Computers & Mathematics with Applications 175, pp. 49 - 61 (2024)

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Hellwig, P.; Dittrich, A.; Heyer, R.; Reichl, U.; Benndorf, D.: Detection, isolation and characterization of phage-host complexes using BONCAT and click chemistry. Frontiers in Microbiology 15, 1434301 (2024)

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Hellwig, P.; Kautzner, D.; Heyer, R.; Dittrich, A.; Wibberg, D.; Busche, T.; Winkler, A.; Reichl, U.; Benndorf, D.: Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins. ISME Communications 4 (1), ycae153 (2024)

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Heyer, R.; Hellwig, P.; Maus, I.; Walke, D.; Schlüter, A.; Hassa, J.; Sczyrba, A.; Tubbesing, T.; Klocke, M.; Mächtig, T. et al.; Schallert, K.; Seick, I.; Reichl, U.; Benndorf, D.: Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenter. Water Research 250, 121020 (2024)

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Huber, N.; Alcalá Orozco, E. A.; Rexer, T.; Reichl, U.; Klamt, S.: Model-based optimization of cell-free enzyme cascades exemplified for the production of GDP-fucose. Metabolic Engineering 81, pp. 10 - 25 (2024)

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Hussein, F. A.; Joshi, M.; Kaur-Ghumaan, S.; Stein, M.: Hydrogen Evolving Mono‐Nuclear Manganese Complexes with Carefully Positioned Pyridine Base Ligands. ChemCatChem 16 (18), e202400450 (2024)

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Jameel, F.; Stein, M.: Chemical accuracy for ligand-receptor binding Gibbs energies through multi-level SQM/QM calculations. Physical Chemistry Chemical Physics 26, pp. 21197 - 21203 (2024)

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Kalosha, J.; Yevgenieva, Y.; Zuyev, A.: Partial Stabilization of an Orbiting Satellite Model with a Flexible Attachment. Journal of Mathematical Sciences (accepted)

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Kapadia, H.; Feng, L.; Benner, P.: Active-Learning-Driven Surrogate Modeling for Efficient Simulation of Parametric Nonlinear Systems. Computer Methods in Applied Mechanics and Engineering 419, 116657 (2024)

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Karsten, C. B.; Buettner, F. F. R.; Cajic, S.; Nehlmeier, I.; Roshani, B.; Klippert, A.; Sauermann, U.; Stolte-Leeb, N.; Reichl, U.; Gerardy-Schahn, R. et al.; Rapp, E.; Stahl-Hennig, C.; Pöhlmann, S.: Macrophage- and CD4+ T cell-derived SIV differ in glycosylation, infectivity and neutralization sensitivity. PLOS Pathogens 20 (5), e1012190 (2024)

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Khesali Aghtaei, H.; Heyer, R.; Reichl, U.; Benndorf, D.: Improved biological methanation using tubular foam-bed reactor. Biotechnology for Biofuels and Bioproducts 17, 66 (2024)

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König-Mattern, L.; Sanchez Medina, E. I.; Komarova, A. O.; Linke, S.; Rihko-Struckmann, L.; Luterbacher, J. S.; Sundmacher, K.: Machine learning-supported solvent design for lignin-first biorefineries and lignin upgrading. Chemical Engineering Journal 495, 153524 (2024)

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Kutscha, R.; Tomin, T.; Birner-Gruenberger, R.; Bekiaris, P. S.; Klamt, S.; Pflügl, S.: Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demand. Biotechnology for Biofuels and Bioproducts 17, 110 (2024)

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Lee, J. W.; Zarei, S.; Kienle, A.; Seidel-Morgenstern, A.: Short-Cut Design of Double-Layer Simulated Moving Bed Chromatography for Continuous Ternary Mixture Separation: Langmuir Isotherms. Industrial & Engineering Chemistry Research 63 (39), pp. 16873 - 16884 (2024)

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Leipold, J.; Jung, M.; Keßler, T.; Kienle, A.: Nonlinear Behavior of Methanol Synthesis Compared to CO2 Methanation. Chemical Engineering and Technology 47 (3), pp. 531 - 536 (2024)

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Liljegren-Sailer, B.; Gosea, I. V.: Data-Driven and Low-Rank Implementations of Balanced Singular Perturbation Approximation. SIAM Journal on Scientific Computing 46 (1), pp. A483 - A507 (2024)

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Lund, K.; Palitta, D.: Low-rank-modified Galerkin Methods for the Lyapunov Equation. Electronic Transactions on Numerical Analysis 62, pp. 1 - 21 (2024)

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Matthies, E.; Beer, K.; Böcher, M.; Sundmacher, K.; König-Mattern, L.; Arlinghaus, J.; Blöbaum, A.; Jaeger-Erben, M.; Schmidt, K.: Framework conditions for the transformation toward a sustainable carbon-based chemical industry – A critical review of existing and potential contributions from the social sciences. Journal of Cleaner Production 470, 143279 (2024)

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Miličić, T.; Muthunayakage, K.; Vũ, T. H.; Ritschel, T. K.S.; Živković, L. A.; Vidaković-Koch, T.: The nonlinear frequency response method for the diagnosis of PEM water electrolyzer performance. Chemical Engineering Journal 496, 153889 (2024)

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Mutavdžin, I.; Seidel-Morgenstern, A.: Estimating the parameters of competitive Langmuir adsorption isotherms from measured responses to rectangular pulse injections exploiting equilibrium theory. Adsorption 30, pp. 337 - 349 (2024)

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Offersgaard, A.; Duarte Hernandez, C. R.; Zhou, Y.; Duan, Z.; Gammeltoft, K. A.; Hartmann, K. T.; Fahnøe, U.; Marichal-Gallardo, P.; Alzua, G. P.; Underwood, A. P. et al.; Sølund, C.; Weis, N.; Bonde, J. H.; Christensen, J. P.; Pedersen, G. K.; Jensen, H. E.; Holmbeck, K.; Bukh, J.; Gottwein, J. M.: An inactivated SARS-CoV-2 vaccine based on a Vero cell culture-adapted high-titer virus confers cross-protection in small animals. Scientific Reports 14 (1), 17039 (2024)

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Otrin, N.; Otrin, L.; Bednarz, C.; Träger, T. K.; Hamdi, F.; Kastritis, P. L.; Ivanov, I.; Sundmacher, K.: Protein-Rich Rafts in Hybrid Polymer/Lipid Giant Unilamellar Vesicles. Biomacromolecules 25 (2), pp. 778 - 791 (2024)

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Otto, E.; Ajalova, A.; Bück, A.; Tsotsas, E.; Kienle, A.: Population Balance Modeling of Particle Size and Porosity in Fluidized Bed Spray Agglomeration. Industrial and Engineering Chemistry Research 61 (41), pp. 17545 - 17556 (2024)

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Özkiliç, Y.; Stein, M.: Modelling the elusive conformational activation in kynurenine 3-monooxygenase. Organic & Biomolecular Chemistry 22, pp. 6550 - 6560 (2024)

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Pelz, L.; Dogra, T.; Marichal-Gallardo, P.; Hein, M. D.; Hemissi, G.; Kupke, S. Y.; Genzel, Y.; Reichl, U.: Production of antiviral “OP7 chimera” defective interfering particles free of infectious virus. Applied Microbiology and Biotechnology 108, 97 (2024)

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Peterson, L.; Bremer, J.; Sundmacher, K.: Challenges in data-based reactor modeling: A critical analysis of purely data-driven and hybrid models for a CSTR case study. Computers & Chemical Engineering 184, 108643 (2024)

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Philipp, F.; Schaller, M.; Worthmann, K.; Peitz, S.; Nüske, F.: Error bounds for kernel-based approximations of the Koopman operator. Applied and Computational Harmonic Analysis 71, 101657 (2024)

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Plate, C.; Sager, S.; Stoll , M.; Teschke, M.: Second-Order Partial Outer Convexification for Switched Dynamical Systems. IEEE Transactions on Automatic Control 69 (7), pp. 4643 - 4656 (2024)

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Ponnudurai, A.; Schulze, P.; Seidel-Morgenstern, A.; Lorenz, H.: Effect of feed concentration in solvent/anti-solvent precipitation fractionation of lignin: Impact on lignins structure-property correlations. Separation and Purification Technology 337, 126343 (2024)

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Przybilla, J.; Pontes Duff, I.; Benner, P.: Model Reduction for Second-Order Systems with Inhomogeneous Initial Conditions. Systems & Control Letters 183, 105671 (2024)

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Przybilla, J.; Pontes Duff, I.; Benner, P.: Semi-Active Damping Optimization of Vibrational Systems using the Reduced Basis Method. Advances in Computational Mathematics 50 (3), 56 (2024)

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Przybilla, J.; Voigt, M.: Model Reduction of Parametric Differential-Algebraic Systems by Balanced Truncation. Mathematical and Computer Modelling of Dynamical Systems 30 (1), pp. 303 - 341 (2024)

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Raabe, J.-C.; Jameel, F.; Stein, M.; Albert, J.; Poller, M. J.: Heteroelements in polyoxometalates: a study on the influence of different group 15 elements on polyoxometalate formation. Dalton Transactions 53, pp. 454 - 466 (2024)

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Riedel, R.; Commichau, F. M.; Benndorf, D.; Hertel, R.; Holzer, K.; Hoelzle, L. E.; Mardoukhi, M. S. Y.; Noack, L. E.; Martienssen, M.: Biodegradation of selected aminophosphonates by the bacterial isolate Ochrobactrum sp. BTU1. Microbiological Research 280, 127600 (2024)

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Riedel, R.; Meißner, K.; Kaschubowski, A.; Benndorf, D.; Martienssen, M.; Braun, B.: Laundry Isolate Delftia sp. UBM14 Capable of Biodegrading Industrially Relevant Aminophosphonates. Microorganisms 12 (8), 1664 (2024)

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