OA Publications of the Max Planck Institute

Journal Article

Liu, Y.; McBride, R.; Stoll, M.; Palma, A. S.; Silva, L.; Agravat, S.; Aoki-Kinoshita, K. F.; Campbell, M. P.; Costello, C. E.; Dell, A. et al.; Haslam, S. M.; Karlsson, N. G.; Khoo, K.-H.; Kolarich, D.; Novotny, M. V.; Packer, N. H.; Ranzinger, R.; Rapp, E.; Rudd, P. M.; Struwe, W. B.; Tiemeyer, M.; Wells, L.; York, W. S.; Zaia, J.; Kettner, C.; Paulson, J. C.; Feizi, T.; Smith, D. F.: The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. Glycobiology 27 (4), pp. 280 - 284 (2017)

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Journal Article

Mangold, M.; Khlopov, D.; Temmel, E.; Lorenz, H.; Seidel-Morgenstern, A.: Modelling Geometrical and Fluid-Dynamic Aspects of a Continuous Fluidized Bed Crystallizer for Separation of Enantiomers. Chemical Engineering Science 160, pp. 281 - 290 (2017)

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Journal Article

McBride, K.; Kaiser, N. M.; Sundmacher, K.: Integrated Reaction-Extraction Process for the Hydroformylation of Long-Chain Alkenes with a Homogeneous Catalyst. Computers and Chemical Engineering 105, pp. 212 - 223 (2017)

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Journal Article

Natarajan, M.; Faujdar, H.; Mobin, S. M.; Stein, M.; Kaur-Ghumaan, S.: A mononuclear iron carbonyl complex [Fe(μ-bdt)(CO)₂(PTA)₂] with bulky phosphine ligands: a model for the [FeFe] hydrogenase enzyme active site with an inverted redox potential. Dalton Transactions 46 (30), pp. 10050 - 10056 (2017)

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Journal Article

Neugebauer, C.; Palis, S.; Bueck, A.; Tsotsas, E.; Heinrich, S.; Kienle, A.: A dynamic two-zone model of continuous fluidized bed layering granulation with internal product classification. Particuology 31, pp. 8 - 14 (2017)

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Journal Article

Otrin, L.; Marušič, N.; Bednarz, C.; Vidaković-Koch, T.; Lieberwirth, I.; Landfester, K.; Sundmacher, K.: Toward Artificial Mitochondrion: Mimicking Oxidative Phosphorylation in Polymer and Hybrid Membranes. Nano Letters 17 (11), pp. 6816 - 6821 (2017)

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Journal Article

Petrenko, A.; Stein, M.: Distal [FeS]-Cluster Coordination in [NiFe]-Hydrogenase Facilitates Intermolecular Electron Transfer. International Journal of Molecular Sciences 18 (1), 100 (2017)

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Journal Article

Pieler, M.; Heyse, A.; Wolff, M. W.; Reichl, U.: Specific ion effects on the particle size distributions of cell culture–derived influenza A virus particles within the Hofmeister series. Engineering in Life Sciences 17 (5), pp. 470 - 478 (2017)

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Journal Article

Pischel, D.; Sundmacher, K.; Flassig, R.: Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems. Bioinformatics 33 (14), pp. i319 - i324 (2017)

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Journal Article

Pralow, A.; Hoffmann, M.; Nguyen-Khuong, T.; Rapp, E.; Reichl, U.: Improvement of the glycoproteomic toolbox with the discovery of a unique C-terminal cleavage specificity of flavastacin for N-glycosylated asparagine. Scientific Reports 7, 11419 (2017)

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Journal Article

Prigent, S.; Frioux, C.; Dittami, S. M.; Thiele, S.; Larhlimi, A.; Collet, G.; Gutknecht, F.; Got, J.; Eveillard, D.; Bourdon, J. et al.; Plewniak, F.; Tonon, T.; Siegel, A.: Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. PLoS Computational Biology 13, e1005276 (2017)

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Journal Article

Qamar, S.; Bashir, S.; Perveen, S.; Seidel-Morgenstern, A.: Analysis of Linear General Rate Model of Reactive Chromatography for Core−Shell Adsorbents. Industrial and Engineering Chemistry Research 56 (34), pp. 9657 - 9678 (2017)

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Journal Article

Qamar, S.; Bibi, S.; Akram, N.; Seidel-Morgenstern, A.: Analysis of Two-Component Non-Equilibrium Model of Linear Reactive Chromatography. Chromatographia 80 (3), pp. 383 - 400 (2017)

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Journal Article

Qamar, S.; Sattar, F. A.; Batool, I.; Seidel-Morgenstern, A.: Theoretical analysis of the influence of forced and inherent temperature fluctuations in an adiabatic chromatographic column. Chemical Engineering Science 161, pp. 249 - 264 (2017)

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Journal Article

Qamar, S.; Uche, D. U.; Khan, F. U.; Seidel-Morgenstern, A.: Analysis of linear two-dimensional general rate model for chromatographic columns of cylindrical geometry. Journal of Chromatography A 1496, pp. 92 - 104 (2017)

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Journal Article

Ricken, B.; Kolvenbach, B. A.; Bergesch, C.; Benndorf, D.; Kroll, K.; Strnad, H.; Vlcek, C.; Adaixo, R.; Hammes, F.; Shahgaldian, P. et al.; Schäffer, A.; Kohler, H.-P. E.; Corvini , P. F.-X.: FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics. Scientific Reports 7, 15783 (2017)

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Journal Article

Rihko-Struckmann, L.; Molnar, M.; Pirwitz, K.; Fachet, M.; McBride, K.; Zinser, A.; Sundmacher, K.: Recovery and Separation of Carbohydrate Derivatives from the Lipid Extracted Alga Dunaliella by Mild Liquefaction. ACS Sustainable Chemistry & Engineering 5 (1), pp. 588 - 595 (2017)

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Journal Article

Salmas, R. E.; Seeman, P.; Aksoydan, B.; Erol, I.; Kantarcioglu, I.; Stein, M.; Yurtsever, M.; Durdagi, S.: Analysis of the Glutamate Agonist LY404,039 Binding to Nonstatic Dopamine Receptor D2 Dimer Structures and Consensus Docking. ACS Chemical Neuroscience 8 (6), pp. 1404 - 1415 (2017)

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Journal Article

Salmas, R. E.; Stein, M.; Yurtsever, M.; Seeman, P.; Erol, I.; Mestanoglu, M.; Durdagi, S.: The signaling pathway of dopamine D2 receptor (D2R) activation using normal mode analysis (NMA) and the construction of pharmacophore models for D2R ligands. Journal of Biomolecular Structure and Dynamics 35 (9), pp. 2040 - 2048 (2017)

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Journal Article

Schiffer, J.; Hans, C. A.; Kral, T.; Ortega, R.; Raisch, J.: Modeling, Analysis and Experimental Validation of Clock Drift Effects in Low-Inertia Power Systems. IEEE Transactions on Industrial Electronics 64 (7), pp. 5942 - 5951 (2017)

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Journal Article

Seel, T.; Schauer, T.; Raisch, J.: Monotonic Convergence of Iterative Learning Control Systems with Variable Pass Length. International Journal of Control 90 (3), pp. 393 - 406 (2017)

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Journal Article

Sorrentino, A.; Vidaković-Koch, T.; Hanke-Rauschenbach, R.; Sundmacher, K.: Concentration-alternating frequency response: A new method for studying polymer electrolyte membrane fuel cell dynamics. Electrochimica Acta 243, pp. 53 - 64 (2017)

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Journal Article

Straube, R.: Analysis of network motifs in cellular regulation: Structural similarities, input–output relations and signal integration. Biosystems 162, pp. 2015 - 232 (2017)

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Journal Article

Straube, R.; Shah, M.; Flockerzi, D.; Wolf, D.A.: Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire. PLoS Computational Biology 13 (11), e1005869 (2017)

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Journal Article

Tapia, F.; Jordan, I.; Genzel, Y.; Reichl, U.: Efficient and stable production of Modified Vaccinia Ankara virus in two-stage semi-continuous and in continuous stirred tank cultivation systems. PLoS One 12 (8), e0182553 (2017)

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Journal Article

Wenzel, M.; Aditya Dharanipragada, N. V. R.; Galvita, V.; Poelman , H.; Marin, G. B.; Rihko-Struckmann, L.; Sundmacher, K.: CO production from CO₂ via reverse water–gas shift reaction performed in a chemical looping mode: Kinetics on modified iron oxide. Journal of CO₂ Utilization 17, pp. 60 - 68 (2017)

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Journal Article

Wenzel, M.; Rihko-Struckmann, L.; Sundmacher, K.: Thermodynamic Analysis and Optimization of RWGS Processes for Solar Syngas Production from CO2. AIChE-Journal 63 (1), pp. 15 - 22 (2017)

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Journal Article

Wiedmeyer, V.; Anker, F.; Bartsch, C.; Voigt, A.; John, V.; Sundmacher, K.: Continuous Crystallization in a Helically Coiled Flow Tube: Analysis of Flow Field, Residence Time Behavior, and Crystal Growth. Industrial and Engineering Chemistry Research 56 (13), pp. 3699 - 3712 (2017)

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Journal Article

Wiedmeyer, V.; Voigt, A.; Sundmacher, K.: Crystal Population Growth in a Continuous Helically Coiled Flow Tube Crystallizer. Chemical Engineering and Technology 40 (9), pp. 1584 - 1590 (2017)

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Journal Article

Yazdi, S.; Naumann, M.; Stein, M.: Double Phosphorylation-Induced Structural Changes in the Signal-Receiving Domain of IκBα in Complex with NF-κB. Proteins: Structure, Function, and Bioinformatics 85 (1), pp. 17 - 29 (2017)

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Journal Article

Zander, D.; Samaga, D.; Straube, R.; Bettenbrock, K.: Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System. Biophysical Journal 112 (9), pp. 1984 - 1996 (2017)

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Journal Article

Zhang, Y.; Feng, L.; Seidel-Morgenstern, A.; Benner, P.: Accelerating Optimization and Uncertainty Quantification of Nonlinear SMB Chromatography Using Reduced-Order Models. Computers & Chemical Engineering 96, pp. 237 - 247 (2017)

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Journal Article

Zhou, T.; Zhou, Y.; Sundmacher, K.: A hybrid stochastic-deterministic optimization approach for integrated solvent and process design. Chemical Engineering Science 159, pp. 207 - 2016 (2017)

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Zuyev, A.; Grushkovskaya, V.: Motion Planning for Control-Affine Systems Satisfying Low-Order Controllability Conditions. International Journal of Control 90 (11), pp. 2517 - 2537 (2017)

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Zuyev, A.; Seidel-Morgenstern, A.; Benner, P.: An Isoperimetric Optimal Control Problem for a Non-Isothermal Chemical Reactor with Periodic Inputs. Chemical Engineering Science 161, pp. 206 - 214 (2017)

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2016

Journal Article

Ahmad, M. I.; Benner, P.; Jaimoukha, I. M.: Krylov Subspace Methods for Model Reduction of Quadratic-Bilinear Systems. IET Control Theory & Applications 10 (16), pp. 2010 - 2018 (2016)

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Journal Article

Benner, P.; Dolgov, S.; Onwunta, A.; Stoll, M.: Low-Rank Solvers for Unsteady Stokes-Brinkman Optimal Control Problem with Random Data. Computer Methods in Applied Mechanics and Engineering 304, pp. 26 - 54 (2016)

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Journal Article

Benner, P.; Goyal, P. K.: Multipoint Interpolation of Volterra Series and H₂-Model Reduction for a Family of Bilinear Descriptor Systems. Systems & Control Letters 97, pp. 1 - 11 (2016)

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Journal Article

Benner, P.; Kürschner, P.; Saak, J.: Frequency-Limited Balanced Truncation with Low-Rank Approximations. SIAM Journal on Scientific Computing 38 (1), pp. A471 - A499 (2016)

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Journal Article

Benner, P.; Kürschner, P.; Tomljanović, Z.; Truhar, N.: Semi-Active Damping Optimization of Vibrational Systems using the Parametric Dominant Pole Algorithm. Zeitschrift für Angewandte Mathematik und Mechanik 96 (5), pp. 604 - 619 (2016)

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Journal Article

Benner, P.; Onwunta, A.; Stoll, M.: Block-diagonal Preconditioning for Optimal Control Problems Constrained by PDEs with Uncertain Inputs. SIAM Journal on Matrix Analysis and Applications 37 (2), pp. 491 - 518 (2016)

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Journal Article

Benner, P.; Saak, J.; Uddin, M. M.: Structure Preserving Model Order Reduction of Large Sparse Second-Order Index-1 Systems and Application to a Mechatronics Model. Mathematical and Computer Modelling of Dynamical Systems 22 (6), pp. 509 - 523 (2016)

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Journal Article

Benner, P.; Sima, V.; Voigt, M.: Algorithm 961 - FORTRAN 77 Subroutines for the Solution of Skew-Hamiltonian/Hamiltonian Eigenproblems. ACM Transactions on Mathematical Software 42 (3), 24, 26 pages (2016)

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Journal Article

Bordron, P.; Latorre, M.; Cortés, M.-P.; González, M.; Thiele, S.; Siegel, A.; Maass, A.; Eveillard, D.: Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. MicrobiologyOpen 5 (1), pp. 106 - 117 (2016)

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Journal Article

Buchholz, H. K.; Emel'yanenko, V. N.; Lorenz, H.; Verevkin, S. P.: An Examination of the Phase Transition Thermodynamics of (S)- and (RS)-Naproxen as a Basis for the Design of Enantioselective Crystallization Processes. European Journal of Pharmaceutical Sciences 105 (5), pp. 1676 - 1683 (2016)

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Journal Article

Cammann, C.; Rath, A.; Reichl, U.; Lingel, H.; Brunner-Weintierl, M.; Simeoni, L.; Schraven, B.; Lindquist, J. A.: Early changes in the metabolic profile of activated CD8+ T cells. BMC Biology 17 (1), 28 (2016)

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Journal Article

Dolgov, S.; Pearson, J. W.; Savostyanov, D. V.; Stoll, M.: Fast tensor product solvers for optimization problems with fractional differential equations as constraints. Applied Mathematics and Computation 273, pp. 604 - 623 (2016)

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Journal Article

Fachet, M.; Hermsdorf, D.; Rihko-Struckmann, L.; Sundmacher, K.: Flow cytometry enables dynamic tracking of algal stress response: A case study using carotenogenesis in Dunaliella salina. Algal Research (13), pp. 227 - 234 (2016)

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Journal Article

Fehr, J.; Heiland, J.; Himpe, C.; Saak, J.: Best Practices for Replicability, Reproducibility and Reusability of Computer-based Experiments exemplified by Model Reduction Software. AIMS Mathematics 1 (3), pp. 261 - 281 (2016)

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