Klamt, S.; Grammel, H.; Straube, R.; Ghosh, R.; Gilles, E. D.: Modeling the electron transport chain of purple non-sulfur bacteria. Molecular Systems Biology 4, 156 (2008)

Koschorreck, M.; Gilles, E. D.: Mathematical modeling and analysis of insulin clearance in vivo. BMC Systems Biology 2, p. 43 (2008)

Koschorreck, M.; Gilles, E. D.: ALC: automated reduction of rule-based models. BMC Systems Biology 2, 91 (2008)

Kremling, A.: Modellierung und Modellanalyse in der Systembiologie am Beispiel der Kohlenhydrataufnahme bei Escherichia coli. at - Automatisierungstechnik 56 (5), pp. 250 - 256 (2008)

Lu, H.; Rihko-Struckmann, L.; Hanke-Rauschenbach, R.; Sundmacher, K.: Dynamic Behavior of a PEM Fuel Cell during Electrochemical CO Oxidation on a PtRu Anode. Topics in Catalysis 51, pp. 89 - 97 (2008)

Reger, J.; Jouffroy, J.: Algebraische Ableitungsschätzung im Kontext der Rekonstruierbarkeit. at - Automatisierungstechnik 6 (56), pp. 324 - 331 (2008)

Schulze-Horsel, J.; Genzel, Y.; Reichl, U.: Flow cytometric monitoring of influenza A virus infection in MDCK cells during vaccine production. BMC Biotechnology 8, p. 45 (2008)

Sewekow, E.; Keßler, L. C.; Seidel-Morgenstern, A.; Rothkoetter, H.-J.: Isolation of soy bean protein P34 from oil bodies using hydrophobic interaction chromatography. BMC Biotechnology 8, p. 27 (2008)

Wahl, S. A.; Nöh, K.; Wiechert, W.: 13C labeling experiments at metabolic nonstationary conditions: an exploratory study. BMC Bioinformatics 9, p. 152 (2008)

Beste, D. J.; Hooper, T.; Stewart, G.; Bonde, B.; Avignone-Rossa, C.; Bushell, M. E.; Wheeler, P.; Klamt, S.; Kierzek, A. M.; McFadden, J.: GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism. Genome Biology 8, R89 (2007)

Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)

Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)

Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)

Lorenz, H.; Czapla, F.; Polenske, D.; Elsner, M. P.; Seidel-Morgenstern, A.: Crystallization based separation of enantiomers (Review). Journal of the University of Chemical Technology and Metallurgy 42 (1), pp. 5 - 16 (2007)

Noack, S.; Wahl, A.; Qeli, E.; Wiechert, W.: Visualizing Regulatory Interactions in Metabolic Networks. BMC Biology 5, p. 46 (2007)

Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)

Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7, 34 (2006)

Klamt, S.; Saez-Rodriguez, J.; Lindquist, J.; Simeoni, L.; Gilles, E. D.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7, p. 56 (2006)

Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)

Elsner, M. P.; Fernandez Menendez, D.; Alonso Muslera, E.; Seidel-Morgenstern, A.: Experimental Study and Simplified Mathematical Description of Preferential Crystallization. Chirality 17 (S1), pp. S183 - S195 (2005)

Schauer, T.; Salbert, R. C.; Negard, N.-O.; Hunt, K. J.; Raisch, J.: Belastungsregelung bei der Elektrostimulationsergometrie. at-Automatisierungstechnik 53 (12), pp. 607 - 614 (2005)

Seidel-Morgenstern, A.: Preparative gradient chromatography. Chemical Engineering and Technology 28 (11), pp. 1265 - 1273 (2005)

Shan, Y.; Seidel-Morgenstern, A.: Isolation of a target component from a multicomponent mixture by coupling batch and continuous countercurrent chromatography. Chemical Engineering and Technology 28 (6), pp. 695 - 704 (2005)

Thomas, S.; Klose, F.; Seidel-Morgenstern, A.: Ausbeutesteigerung mittels Membranreaktoren bei Parallel- und Folgereaktionen. Chemie-Ingenieur-Technik 77 (12), pp. 1901 - 1909 (2005)

Chen, G.; Paces, M.; Marek, M.; Zhang, Y.; Seidel-Morgenstern, A.; Tallarek, U.: Dynamics of Capillary Electrochromatography: Experimental Study of Flow and Transport in Particulate Beds. Chemical Engineering and Technology 27, pp. 417 - 428 (2004)

Gagneur, J.; Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 5, 175 (2004)

Kenig, E. Y.; Pyhälahti, A.; Jakobsson, K.; Górak, A.; Aittamaa, J.; Sundmacher, K.: Advanced Rate-Based Simulation Tool for Reactive Distillation. AIChE Journal 50, pp. 322 - 342 (2004)

Mangold, M.; Sheng, M.: Nonlinear model reduction of a two-dimensional MCFC model with internal reforming. Fuel Cells: from Fundamentals to Systems 4, pp. 68 - 77 (2004)

Qi, Z.; Flockerzi, D.; Sundmacher, K.: Singular Points of Reactive Distillation Systems. AIChE Journal 50, pp. 2866 - 2876 (2004)

Sosa, N.; Kremling, A.; Ratsch, E.; Rojas, I.: Web-based visualisation of the transcriptional control network of Escherichia coli. In Silico Biology 4 (4), pp. 507 - 515 (2004)

Hanke, R.; Hannemann, F.; Sundmacher, K.: Dynamic simulation of a low-temperature rectification column as part of an IGCC power plant. Chemical Engineering & Technology 26, pp. 1126 - 1130 (2003)

Schramm, H.; Kaspereit, M.; Kienle, A.; Seidel-Morgenstern, A.: Verbesserter Betrieb von Simulated Moving Bed-Prozessen durch zyklische Modulation der Feedkonzentration. Chemie-Ingenieur-Technik 75 (4), pp. 379 - 383 (2003)

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M. (Eds.): Model Order Reduction: Volume I: System- and Data-Driven Methods and Algorithms. De Gruyter, Berlin, Boston (2021)

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M. (Eds.): Model Order Reduction - Volume 2: Snapshot-Based Methods and Algorithms. De Gruyter, Berlin, Boston (2021)

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M. (Eds.): Model Order Reduction: Volume 3: Applications. De Gruyter, Berlin, Boston (2021)

Lorenz, H.; Temmel, E. (Eds.): Advances in Industrial Crystallization. MDPI, Basel, Switzerland (2021), 258 pp.

Gosea, I. V.; Poussot-Vassal, C.; Antoulas, A. C.: Data-driven modeling and control of large-scale dynamical systems in the Loewner framework: Methodology and applications. In: Numerical Control: Part A, pp. 499 - 530 (Eds. Trélat, E.; Zuazua, E.). Elsevier (2022)

Benner, P.; Feng, L.: Model Order Reduction based on Moment-Matching. In: Model Order Reduction: Volume 1: System- and Data-Driven Methods and Algorithms, pp. 57 - 96 (Eds. Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W. et al.). De Gruyter, Berlin, Boston (2021)

Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W.; Silveira, L. M.: Model Order Reduction: Basic Concepts and Notation. In: Model Order Reduction: Volume 1: System- and Data-Driven Methods and Algorithms, pp. 1 - 14 (Eds. Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W. et al.). De Gruyter, Berlin, Boston (2021)

Benner, P.; Köhler, M.; Saak, J.: Matrix Equations, Sparse Solvers: M-M.E.S.S.-2.0.1 -- Philosophy, Features and Application for (Parametric) Model Order Reduction. In: Model Reduction of Complex Dynamical Systems, pp. 369 - 392 (Eds. Benner, P.; Breiten, T.; Faßbender, H.; Hinze, M.; Stykel, T. et al.). Birkhäuser, Cham (2021)

Benner, P.; Seidel-Morgenstern, A.; Zuyev, A.: Analysis of Switching Strategies for the Optimization of Periodic Chemical Reactions with Controlled Flow-Rate: DSTA, Łódź, Poland December 2–5, 2019. In: Perspectives in Dynamical Systems III: Control and Stability, pp. 59 - 69 (Ed. Awrejcewicz, J.). Springer International Publishing, Switzerland (2021)

Benner, P.; Werner, S. W. R.: MORLAB – The Model Order Reduction LABoratory. In: Model Reduction of Complex Dynamical Systems, pp. 393 - 415 (Eds. Benner, P.; Breiten, T.; Faßbender, H.; Hinze, M.; Stykel, T. et al.). Birkhäuser, Cham, Switzerland (2021)

Cajic, S.; Hennig, R.; Burock, R.; Rapp, E.: Capillary (Gel) Electrophoresis-Based Methods for Immunoglobulin (G) Glycosylation Analysis. In: Antibody Glycosylation, pp. 137 - 172 (Ed. Pezer, M.). Springer, Cham, Switzerland (2021)

Chellappa, S.; Feng, L.; de la Rubia, V.; Benner, P.: Adaptive Interpolatory MOR by Learning the Error Estimator in the Parameter Domain. In: Model Reduction of Complex Dynamical Systems, pp. 97 - 117 (Eds. Benner, P.; Breiten, T.; Faßbender, H.; Hinze, M.; Stykel, T. et al.). Birkhäuser, Cham (2021)

Gosea, I. V.; Pontes Duff, I.: Toward Fitting Structured Nonlinear Systems by Means of Dynamic Mode Decomposition. In: Model Reduction of Complex Dynamical Systems, pp. 53 - 74 (Eds. Benner, P.; Breiten , T.; Faßbender, H.; Hinze, M.; Stykel, T. et al.). Birkhäuser, Cham, Switzerland (2021)

Gräßle, C.; Hinze, M.; Volkwein, S.: Model Order Reduction by Proper Orthogonal Decomposition. In: Model Order Reduction: Volume 2: Snapshot-Based Methods and Algorithms, pp. 47 - 96 (Eds. Benner, P.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G.; Schilders, W. et al.). De Gruyter (2021)

Henning, J.; Palitta, D.; Simoncini, V.; Urban, K.: Matrix Oriented Reduction of Space-Time Petrov-Galerkin Variational Problems. In: Numerical Mathematics and Advanced Applications ENUMATH 2019: European Conference, Egmond aan Zee, The Netherlands, September 30 - October 4, pp. 1049 - 1057 (Eds. Vermolen, F. J.; Vuik, C.). Springer, Cham, Switzerland (2021)

Himpe, C.: Comparing (Empirical-Gramian-Based) Model Order Reduction Algorithms. In: Model Reduction of Complex Dynamical Systems, pp. 141 - 164 (Eds. Benner, P.; Breiten , T.; Faßbender, H.; Hinze, M.; Stykel, T. et al.). Birkhäuser, Cham, Switzerland (2021)

Horosanskaia, E.; Yuan, L.; Seidel-Morgenstern, A.; Lorenz, H.: Purification of Curcumin from Ternary Extract-Similar Mixtures of Curcuminoids in a Single Crystallization Step. In: Advances in Industrial Crystallization, pp. 53 - 68 (Eds. Temmel, E.; Lorenz, H.). MDPI, Basel, Switzerland (2021)

Karachalios, D.; Gosea, I. V.; Antoulas, A. C.: The Loewner Framework for System Identification and Reduction. In: Model Order Reduction: Volume I: System- and Data-Driven Methods and Algorithms, pp. 181 - 228 (Eds. Benner, P.; Schilders, W.; Grivet-Talocia, S.; Quarteroni, A.; Rozza, G. et al.). De Gruyter, Berlin, Boston (2021)