Team Leader (MOD)

Prof. Dr.-Ing. Udo Reichl
Prof. Dr.-Ing. Udo Reichl
Phone: +49 391 6110 201
Fax: +49 391 6110 203
Room: N0.19

Researchers

João Ramos, M. Sc.
João Ramos, M. Sc.
Phone: +49 391 6110 227
+351 967 942 999
Room: N0.05
Links: IMPRS page
PD Dr. Yvonne Genzel
PD Dr. Yvonne Genzel
Phone: +49 391 6110 257
Room: N0.18

Additional Information

Internal collaborations
T. Bissinger (USP)

External collaborations
Ana Sofia Coroadinha (IBET)

Dynamics of Glycolysis and Citric Acid Cycle in Mammalian Cells

Header image 1444310895

Dynamics of Glycolysis and Citric Acid Cycle in Mammalian Cells

Motivation

Animal cell lines are widely used in various processes for the production of high value biopharmaceuticals, i.e. recombinant proteins or viral antigens [6]. Often the yield of these post-translational modified proteins is comparatively low. Accordingly, process development and cell lines optimization are of considerable interest. Typically, cell line optimization relies on the studies of the cellular metabolism and especially on the dynamics of glycolysis and citric acid cycle as central pathways of energy and carbon metabolism. In bacteria and yeast, for example, cell line optimization using a combination of experimental and mathematical approaches to study metabolism enabled a significant improvement of many biotechnological processes.
In contrast, improvement of animal cells relying on studies of metabolism on a system level is still a significant challenge. Compartmentalization as well as many changes in reactions and control of metabolic pathways due to the immortalization of production cell lines, complicates this task. Additionally, not much experimental data regarding the dynamics of intracellular metabolite concentrations and enzyme activities of production cell lines used in biotechnological processes are available.

Central carbon metabolism of adherently growing Madin Darby Canine Kidney cells used for influenza vaccine production (modified from Wahl et. al., 2008) [3]. Some reactions were lumped; green: measured metabolite concentrations (Ritter et. al. 2006) [4]; blue: measured in vitro enzyme activities (Janke et. al. 2010) [2] Zoom Image
Central carbon metabolism of adherently growing Madin Darby Canine Kidney cells used for influenza vaccine production (modified from Wahl et. al., 2008) [3]. Some reactions were lumped; green: measured metabolite concentrations (Ritter et. al. 2006) [4]; blue: measured in vitro enzyme activities (Janke et. al. 2010) [2] [less]

Quantitative models

To improve our understanding of the highly complex carbon and energy metabolism of animal cells a combination of mathematical approaches and experimental methods from the field of systems biology are required. To perform a systems analysis of the metabolism of cells, the development of a validated quantitative mathematical model is central. One model, which was established recently by Rehberg et al. for adherent Madin Darby Canine Kidney (MDCK) cells [2], is based on differential algebraic equations, and balances the amount of each metabolite in the reaction sequence of the corresponding pathway. The derived model was validated against time resolved data of more than 30 intracellular metabolites, including organic acids, sugar phosphates and nucleotides (Project: Quantitative Analysis of Energy Metabolism of Animal Cells). Furthermore, this segregated model used in vitro enzyme activities measured for MDCK cells by our group (Project: Enzymatic Characterization of Mammalian Cells) [1].

Aim of the project

The current focus of this project is the adaptation of the models established by Rehberg et al. [1] to describe cultivations of suspension cells such as MDCK_SUS2 or AGE1.HN.ATT (a human designer cell line). The performance of the models will be assessed with data (extracellular and intracellular metabolite concentrations, enzyme activities) collected during various batch experiments performed by our group [5]. Furthermore, the models will be validated using data obtained from substrate limitation experiments. Based on a validated model, we will design new experiments to gain further insight into the regulation of pathways and enzymes under various cultivations conditions. For MDCK_SUS2 cells, in addition, the model will be used to study the impact of viral replication on the intracellular metabolism. Overall, this work will contribute to the identification of process parameters relevant for increasing specific productivity of animal cell lines, and the optimization of related biopharmaceutical processes.

References

1.
Rehberg, M.; Rath, A.; Ritter, J.; Genzel, Y.; Reichl, U.: Changes in intracellular metabolite pools during growth of adherent MDCK cells in two different media. Applied Microbiology and Biotechnology 98 (1), pp. 385 - 397 (2014)
2.
Janke, R.; Genzel, Y.; Wahl, A.; Reichl, U.: Measurement of Key Metabolic Enzyme Activities in Mammalian Cells Using Rapid and Sensitive Microplate-Based Assays. Biotechnology and Bioengineering 107 (3), pp. 566 - 581 (2010)
3.
Wahl, A.; Sidorenko, Y.; Dauner, M.; Genzel, Y.; Reichl, U.: Metabolic flux model for an anchorage-dependent MDCK cell line: Characteristic Growth Phases and Minimum Substrate Consumption Flux Distribution. Biotechnology and Bioengineering 101 (1), pp. 135 - 152 (2008)
4.
Ritter, J. B.; Genzel, Y.; Reichl, U.: High-performance anion-exchange chromatography using on-line electrolytic eluent generation for the determination of more than 25 intermediates from energy metabolism of mammalian cells in culture. Journal of Chromatography B 843 (2), pp. 216 - 226 (2006)
5.
Rath, A.; Rehberg, M.; Janke, R.; Genzel, Y.; Scholz, S.; Noll, T.; Rose, T.; Sandig, V.; Reichl, U.: The influence of cell growth and enzyme activity changes on intracellular metabolite dynamics in AGE1.HN.AAT cells. Journal of Biotechnology 178, pp. 43 - 53 (2014)
6.
Birch, J.R.; Arathoon, R.:
Suspension culture of mammalian cells.
 
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