Publications of Samira Yazdi

Kanan, T., Kanan, D., Erol, I., Yazdi, S., Stein, M., & Durdagi, S. (2019)Targeting the NF-κB/IκBα complex via fragment-based E-Pharmacophore virtual screening and binary QSAR modelsJournal of Molecular Graphics and Modelling, 86, 264–277doi: 10.1016/j.jmgm.2018.09.014.

Yazdi, S., Naumann, M., & Stein, M. (2017)Double Phosphorylation-Induced Structural Changes in the Signal-Receiving Domain of IκBα in Complex with NF-κBProteins: Structure, Function, and Bioinformatics, 85 (1), 17–29doi: 10.1002/prot.25181.

Yazdi, S., Stein, M., Elinder, F., Andersson, M., & Lindahl, E. (2016)The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium ChannelPLoS Computational Biology, 12 (1), e1004704doi: 10.1371/journal.pcbi.1004704.

Yazdi, S., Durdagi, S., Naumann, M., & Stein, M. (2015)Structural modeling of the N-terminal signal–receiving domain of IκBαfrontiers in Molecular Biosciences, 2, 32doi: 10.3389/fmolb.2015.00032.

Edler, E., Yazdi, S., & Stein, M. (2015)The Molecular Systems Biology Of Signaling And Metabolic NetworksIn: 3rd INTERNATIONAL BAU-DRUG DESIGN CONGRESS: Novel Methods and Emerging Targets in Drug Discovery & Patented Drug Development, 41–41.

Yazdi, S., Andersson, M., Elinder, F., Stein, M., & Lindahl, E. (2014)Molecular Characterization of the Binding of Polyunsaturated Fatty Acids to a Voltage-Gated Potassium ChannelIn: Biophysical Journal (Annual Meeting Abstracts), 739A–739A.

Edler, E., Yazdi, S., & Stein, M.The Molecular Systems Biology Of Signaling And Metabolic NetworksPresented at: 3rd INTERNATIONAL BAU-DRUG DESIGN CONGRESS: Novel Methods and Emerging Targets in Drug Discovery & Patented Drug DevelopmentIstanbul, Turkey, October 1, 2015.

Durdagi, S., Yazdi, S., & Stein, M.Analysis of Protein-Protein Interactions of the Site-specific Mono and tetra-Ubiquitin-associated IκBα / NF-κB ComplexesPresented at: 6th Theoretical Biophysics Symposium 2013Gothenburg, Sweden, June 24, 2013.

Yazdi, S., Andersson, M., Elinder, F., Stein, M., & Lindahl, E.Molecular Characterization of the Binding of Polyunsaturated Fatty Acids to a Voltage-Gated Potassium ChannelPresented at: 58th Annual Meeting of the Biophysical SocietySan Francisco, USA, February 15, 2014.

Yazdi, S., Durdagi, S., & Stein, M.The structural biology of IκBα and NF-κB signallingPresented at: Signal Transduction: Receptors, Mediators and Genes 2013 MeetingWeimar, Germany, November 4, 2013.

Yazdi, S., Durdagi, S., & Stein, M.The interplay between phosphorylation of IκBα and its recognition by β-TrCP through MD simulation and protein-protein dockingPresented at: TheoBio 2013 - 6th International Theoretical Biophysics SymposiumGothenburg, Sweden, June 24, 2013.

Yazdi, S. & Stein, M.Unraveling the structural effects of phosphorylation on the human IκBα/NF-κB complexPresented at: ISMB/ECCB 2013 - 21st Annual International Conference on Intelligent Systems for Molecular Biology, 12th European Conference on Computational BiologyBerlin, Germany, June 19, 2013.

Yazdi, S. & Stein, M.Computational Molecular Systems BiologyPresented at: IAS Winter School - Hierarchical Methods for Dynamics in Complex Molecular SystemsJülich, Germany, March 5, 2012.

Yazdi, S. (2016)The Structural Dynamics of Soluble and Membrane Proteins Explored through Molecular SimulationsPhD Thesis, Otto-von-Guericke-Universität, Magdeburgdoi: 10.25673/4464.

Yazdi, S., Naumann, M., & Stein, M. (2017)Cover ImageProteins: Structure, Function, and Bioinformatics, 85(1), C4–C4New York, NY: John Wiley & Sonsdoi: 10.1002/prot.25217.