Publications of Serdar Durdagi

Salmas, R. E., Is, Y. S., Durdagi, S., Stein, M., & Yurtsever, M. (2018)A QM protein–ligand investigation of antipsychotic drugs with the dopamine D2 Receptor (D2R)Journal of Biomolecular Structure and Dynamics, 36 (10), 2668–2677doi: 10.1080/07391102.2017.1365772.

Salmas, R. E., Seeman, P., Stein, M., & Durdagi, S. (2018)Structural Investigation of the Dopamine-2 Receptor Agonist Bromocriptine Binding to Dimeric D2HighR and D2LowR StatesJournal of Chemical Information and Modeling, 58 (4), 826–836doi: 10.1021/acs.jcim.7b00722.

Salmas, R. E., Yurtsever, M., Stein, M., & Durdagi, S. (2015)Modeling and protein engineering studies of active and inactive states of human dopamine D2 receptor (D2R) and investigation of drug/receptor interactionsMolecular Diversity, 19 (2), 321–332doi: 10.1007/s11030-015-9569-3.

Yazdi, S., Durdagi, S., Naumann, M., & Stein, M. (2015)Structural modeling of the N-terminal signal–receiving domain of IκBαfrontiers in Molecular Biosciences, 2, 32doi: 10.3389/fmolb.2015.00032.

Durdagi, S., Randal, T., Duff, H. J., & Noskov, S. Y.Rehabilitation Studies for Withdrawn Drugs from the Market Using Multi-Scale Modeling ApproachesPresented at: Rehabilitation Studies for Withdrawn Drugs from the Market Using Multi-Scale Modeling ApproachesIstanbul, Turkey, March 21, 2013.

Durdagi, S., Samira, Y., & Stein, M.Protein-Protein Docking Analysis and Refinement of the Ubiquitin- and Tetraubiquitin-associated IkBa/NF-kB ComplexPresented at: 27th Molecular Modeling WorkshopErlangen, Germany, February 25, 2013.

Durdagi, S., Yazdi, S., & Stein, M.Analysis of Protein-Protein Interactions of the Site-specific Mono and tetra-Ubiquitin-associated IκBα / NF-κB ComplexesPresented at: 6th Theoretical Biophysics Symposium 2013Gothenburg, Sweden, June 24, 2013.

Salmas, R. E., Durdagi, S., Stein, M., & Yurtsever, M.Dopamin (D2) Reseptorünün Aktif ve Aktif Olmayan Fonformasyonlarının Protein Modelleme Teknikleri ile Geliştirilmesi ve Şizofreni İlaçları İle Olan Etkileşimlerinin AydınlatılmasıPresented at: 25. Ulusal Biyofizik KongresiTrabzon, Turkey, September 24, 2013.

Durdagi, S., Randal, T., Duff, H. J., & Noskov, S. Y.Rehabilitation Studies for withdrawn drugs from the market: derivation of non-hERG1 channel blocker cisapride analogues using multi-faceted approachesPresented at: 57th Biophysical Society MeetingPhiladelphia, USA, February 2, 2013.

Yazdi, S., Durdagi, S., & Stein, M.The structural biology of IκBα and NF-κB signallingPresented at: Signal Transduction: Receptors, Mediators and Genes 2013 MeetingWeimar, Germany, November 4, 2013.

Yazdi, S., Durdagi, S., & Stein, M.The interplay between phosphorylation of IκBα and its recognition by β-TrCP through MD simulation and protein-protein dockingPresented at: TheoBio 2013 - 6th International Theoretical Biophysics SymposiumGothenburg, Sweden, June 24, 2013.