Publications of E. D. Gilles

Journal Article (14)

2009
Journal Article
Mirschel, S.; Steinmetz, K.; Rempel, M.; Ginkel, M.; Gilles, E. D.: ProMoT: Modular Modeling for Systems Biology. Bioinformatics 25 (5), pp. 687 - 689 (2009)
Journal Article
Poltz, R.; Franke, R.; Schweitzer, K.; Klamt, S.; Gilles, E. D.; Naumann, M.: Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry 2, pp. 125 - 138 (2009)
2008
Journal Article
Conzelmann, H.; Fey, D.; Gilles, E. D.: Exact model reduction of combinatorial reaction networks. BMC Systems Biology 2, p. 78 (2008)
Journal Article
Franke, R.; Mueller, M.; Wundrack, N.; Gilles, E. D.; Klamt, S.; Kaehne, T.; Naumann, M.: Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction. BMC Systems Biology 2, 4 (2008)
Journal Article
Klamt, S.; Grammel, H.; Straube, R.; Ghosh, R.; Gilles, E. D.: Modeling the electron transport chain of purple non-sulfur bacteria. Molecular Systems Biology 4, 156 (2008)
Journal Article
Koschorreck, M.; Gilles, E. D.: Mathematical modeling and analysis of insulin clearance in vivo. BMC Systems Biology 2, p. 43 (2008)
Journal Article
Koschorreck, M.; Gilles, E. D.: ALC: automated reduction of rule-based models. BMC Systems Biology 2, 91 (2008)
2007
Journal Article
Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)
Journal Article
Koschorreck, M.; Conzelmann, H.; Ebert, S.; Ederer, M.; Gilles, E. D.: Reduced modeling of signal transduction - a modular approach. BMC Bioinformatics 8, 336 (2007)
Journal Article
Kremling, A.; Bettenbrock, K.; Gilles, E. D.: Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 1, 42 (2007)
Journal Article
Saez-Rodriguez, J.; Simeoni, L.; Lindquist, J.; Hemenway, R.; Bommhardt, U.; Arndt, B.; Haus, U. U.; Weismantel, R.; Gilles, E. D.; Klamt, S. et al.; Schraven, B.: A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 3, e163 (2007)
2006
Journal Article
Conzelmann, H.; Saez-Rodriguez, J.; Sauter, T.; Kholodenko, B. N.; Gilles, E. D.: A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 7, 34 (2006)
Journal Article
Klamt, S.; Saez-Rodriguez, J.; Lindquist, J.; Simeoni, L.; Gilles, E. D.: A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 7, p. 56 (2006)
Journal Article
Saez-Rodriguez, J.; Mirschel, S.; Hemenway, R.; Klamt, S.; Gilles, E. D.; Ginkel, M.: Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 7, 506 (2006)

Conference Paper (4)

2010
Conference Paper
Herzer, B.; Gilles, E. D.: Disturbance Estimation for Feedforward Control of Inland Vessels. 8th IFAC Conference on Control Applications in Marine Systems, CAMS 2010, Rostock-Warnemünde, Germany, September 15, 2010 - September 17, 2010. IFAC Proceedings Volumes 43 (20), pp. 213 - 218 (2010)
Conference Paper
Lachmeyer, A.; Herzer, B.; Gilles, E. D.: Path Planning for Lock Entering Maneuvers Using Nonlinear Programming. 8th IFAC Conference on Control Applications in Marine Systems, CAMS 2010, Rostock-Warnemünde, Germany, September 15, 2010 - September 17, 2010. IFAC Proceedings Volumes 43 (20), pp. 58 - 61 (2010)
Conference Paper
Lutz, A.; Gilles, E. D.: An Automatic Collision Detection and Avoidance Module for Inland Navigation. 8th IFAC Conference on Control Applications in Marine Systems, CAMS 2010, Rostock-Warnemünde, Germany, September 15, 2010 - September 17, 2010. IFAC Proceedings Volumes 43 (20), pp. 254 - 259 (2010)
2001
Conference Paper
Klamt, S.; Kremling, A.; Gilles, E. D.: FluxAnalyzer: a graphical user interface for stoichiometric and quantitative analysis of metabolic networks. 8th IFAC Internationall Conference on Computer Applications in Biotechnology, Québec, June 24, 2001 - June 27, 2001. IFAC Proceedings Volumes, pp. 119 - 124 (2001)
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