Publications of S. Klamt
All genres
Journal Article (89)
2014
Journal Article
13, 128 (2014)
Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling. Microbial Cell Factories
Journal Article
10 (1), e1003378 (2014)
Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks. PLoS Computational Biology
Journal Article
14, 72 (2014)
The avian cell line AGE1.CR.pIX characterized by metabolic flux analysis. BMC Biotechnology 2013
Journal Article
7, 135 (2013)
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formlisms and tools. BMC Systems Biology
Journal Article
9 (7), pp. 1576 - 1583 (2013)
Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models. Molecular BioSystems
Journal Article
12, 84 (2013)
In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories. Microbial Cell Factories
Journal Article
14 (1), 318 (2013)
Comparison and improvement of algorithms for computing minimal cut sets. BMC Bioinformatics
Journal Article
9 (9), e1003204 (2013)
Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs. PLoS Computational Biology
Journal Article
7, 73 (2013)
Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation. BMC Systems Biology
Journal Article
11 (1), 43 (2013)
Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks. Cell Communication and Signaling 2011
Journal Article
5, 150 (2011)
Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria. BMC Systems Biology
Journal Article
7 (12), pp. 3253 - 3270 (2011)
Large-scale models of IL-1 and IL-6 signaling and their hepatocellular specification. Molecular BioSystems 2010
Journal Article
7 (1), 151 (2010)
From Binary to Multivalued to Continuous Models: The Iac Operon as a Case Study. Journal of Integrative Bioinformatics
Journal Article
26 (17), pp. 2160 - 2168 (2010)
TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics
Journal Article
17 (1), pp. 39 - 53 (2010)
Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. Journal of Computational Biology 2009
Journal Article
5 (5), p. e1000385 (2009)
Hypergraphs and cellular networks. PLoS Computational Biology
Journal Article
10, p. 181 (2009)
Computing Paths and Cycles in Biological Interaction Graphs. BMC Bioinformatics
Journal Article
2, pp. 125 - 138 (2009)
Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry
Journal Article
5, p. 331 (2009)
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Molecular Systems Biology
Journal Article
5 (8), e1000438 (2009)
The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Computational Biology