Publications

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Journal Article (17)

  1. 1.
    Journal Article
    Buchbinder, J. H.; Pischel, D.; Sundmacher, K.; Flassig, R.; Lavrik, I. N.: Quantitative single cell analysis uncovers the life/death decision in CD95 network. PLOS Computational Biology 14 (9), e1006368 (2018)
  2. 2.
    Journal Article
    Kaiser, N. M.; Flassig, R.; Sundmacher, K.: Reactor-Network Synthesis via Flux Profile Analysis. Chemical Engineering Journal 335, pp. 1018 - 1030 (2018)
  3. 3.
    Journal Article
    Pischel, D.; Buchbinder, J.; Sundmacher, K.; Lavrik, I.; Flassig, R.: A guide to automated apoptosis detection: How to make sense of imaging flow cytometry data. PLoS ONE 13 (5), e0197208 (2018)
  4. 4.
    Journal Article
    Fachet, M.; Flassig, R.; Rihko-Struckmann, L.; Sundmacher, K.: Carotenoid Production Process Using Green Microalgae of the Dunaliella Genus: Model-Based Analysis of Interspecies Variability. Industrial and Engineering Chemistry Research 56 (45), pp. 12888 - 12898 (2017)
  5. 5.
    Journal Article
    Kaiser , N. M.; Jokiel, M.; McBride, K.; Flassig, R.; Sundmacher, K.: Optimal Reactor Design via Flux Profile Analysis for an Integrated Hydroformylation Process. Industrial and Engineering Chemistry Research 56 (40), pp. 11507 - 11518 (2017)
  6. 6.
    Journal Article
    Pischel, D.; Sundmacher, K.; Flassig, R.: Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems. Bioinformatics 33 (14), pp. i319 - i324 (2017)
  7. 7.
    Journal Article
    Flassig, R.; Fachet, M.; Höffner, K.; Barton, P. I.; Sundmacher, K.: Dynamic flux balance modeling to increase the production of high-value compounds in green microalgae. Biotechnology for Biofuels 9 (165), pp. 1 - 12 (2016)
  8. 8.
    Journal Article
    Kaiser, N. M.; Flassig, R.; Sundmacher, K.: Probabilistic Reactor Design in the Framework of Elementary Process Functions. Computers & Chemical Engineering, pp. 45 - 59 (2016)
  9. 9.
    Journal Article
    Do Thi, Q. N.; Varničić, M.; Flassig, R.; Vidaković-Koch, T.; Sundmacher, K.: Dynamic and Steady State 1-D Model of Mediated Electron Transfer in a Porous Enzymatic Electrode. Bioelectrochemistry 106 (Part A), pp. 3 - 13 (2015)
  10. 10.
    Journal Article
    Flassig, R.; Migal, I.; van der Zalm, E.; Rihko-Struckmann, L.; Sundmacher, K.: Rational selection of experimental readout and intervention sites for reducing uncertainties in computational model predictions. BMC Bioinformatics 16, 13 (2015)
  11. 11.
    Journal Article
    Pirwitz, K.; Flassig, R.; Rihko-Struckmann, L.; Sundmacher, K.: Energy and operating cost assessment of competing harvesting methods for D. salina in a ß-carotene production process. Algal Research 12, pp. 161 - 169 (2015)
  12. 12.
    Journal Article
    Fachet, M.; Flassig, R.; Rihko-Struckmann, L.; Sundmacher, K.: A dynamic growth model of Dunaliella salina: Parameter identification and profile likelihood analysis. Bioresource Technology 173, pp. 21 - 31 (2014)
  13. 13.
    Journal Article
    Flassig, R.; Maubach, G.; Täger, C.; Sundmacher, K.; Naumann, M.: Experimental design, validation and computational modeling uncover DNA damage sensing by DNA-PK and ATM. Molecular BioSystems 10 (7), pp. 1978 - 1986 (2014)
  14. 14.
    Journal Article
    Flassig, R.; Heise, S.; Sundmacher, K.; Klamt, S.: An effective framework for reconstructing gene regulatory networks from genetical genomics data. Bioinformatics 29 (2), pp. 246 - 254 (2013)
  15. 15.
    Journal Article
    Pinna, A.; Heise, S.; Flassig, R.; de la Fuente, A.; Klamt, S.: Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation. BMC Systems Biology 7, p. 73 (2013)
  16. 16.
    Journal Article
    Flassig, R.; Sundmacher, K.: Optimal design of stimulus experiments for robust discrimination of biochemical reaction networks. Bioinformatics 28 (23), pp. 3089 - 3096 (2012)
  17. 17.
    Journal Article
    Klamt, S.; Flassig, R.; Sundmacher, K.: TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics 26 (17), pp. 2160 - 2168 (2010)

Book Chapter (1)

  1. 18.
    Book Chapter
    Heise, S.; Flassig, R.; Klamt, S.: Benchmarking a Simple Yet Effective Approach for Inferring Gene Regulatory Networks from Systems Genetic Data. In: Gene Network Inference: Verification of Methods for Systems Genetic Data., pp. 33 - 47. Springer, Heidelberg (2013)

Conference Paper (4)

  1. 19.
    Conference Paper
    Kaiser, N. M.; Flassig, R.; Sundmacher, K.: Design and Comparison of Optimal Reactor Concepts for the Hydroformylation of Olefins by Use of a Probabilistic Design Framework. In: 26th European Symposium on Computer Aided Process Engineering, pp. 1365 - 1370. 26th European Symposium on Computer Aided Process Engineering - ESCAPE 26, Portorož, Slovenia, June 12, 2016 - June 15, 2016. (2016)
  2. 20.
    Conference Paper
    Pischel, D.; Flassig, R.; Sundmacher, K.: Efficient simulation of heterogeneity and stochasticity in microbial processes. In: 26th European Symposium on Computer Aided Process Engineering, pp. 1213 - 1218. 26th European Symposium on Computer Aided Process Engineering - ESCAPE26, Portorož, Slovenia, June 12, 2016 - June 15, 2016. (2016)
 
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