Publications of Julio Saez-Rodriguez
All genres
Journal Article (18)
1.
Journal Article
16 (1), 345 (2015)
Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies. BMC Bioinformatics 2.
Journal Article
7, 135 (2013)
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formlisms and tools. BMC Systems Biology 3.
Journal Article
9 (7), pp. 1576 - 1583 (2013)
Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models. Molecular BioSystems 4.
Journal Article
5, p. 331 (2009)
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Molecular Systems Biology 5.
Journal Article
5 (8), e1000438 (2009)
The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Computational Biology 6.
Journal Article
24 (16), pp. i213 - i219 (2008)
Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. Bioinformatics 7.
Journal Article
2 (2), pp. 80 - 93 (2008)
Multistability of signal transduction motifs. IET Systems Biology 8.
Journal Article
180 (10), pp. 6703 - 6712 (2008)
Dynamics of proximal signaling events after TCR/CD8-mediated induction of proliferation or apoptosis in mature CD8+ T cells. Journal of Immunology 9.
Journal Article
1, 2 (2007)
Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 10.
Journal Article
129 (2), pp. 329 - 351 (2007)
Systems biology: An engineering perspective. Journal of Biotechnology 11.
Journal Article
3, e163 (2007)
A logical model provides insights into T cell receptor signaling. PLoS Computational Biology 12.
Journal Article
7, 34 (2006)
A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks. BMC Bioinformatics 13.
Journal Article
7, p. 56 (2006)
A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics 14.
Journal Article
7, 506 (2006)
Visual set-up of logical models of signaling and regulatory networks with ProMoT. BMC Bioinformatics 15.
Journal Article
152 (4), pp. 243 - 248 (2005)
Using Chemical Reaction Network Theory to discard a Kinetic Mechanism Hypothesis. IEE Proceedings Systems Biology 16.
Journal Article
29, pp. 619 - 629 (2005)
Dissecting the Puzzle of Life: Modularization of Signal Transduction Networks. Computers & Chemical Engineering 17.
Journal Article
1, pp. 159 - 169 (2004)
Reduction of Mathematical Models of Signal Transduction Networks: Simulation-Based Approach Applied to EGF Receptor Signalling. Systems Biology 18.
Journal Article
24 (4), pp. 35 - 52 (2004)
Modular Analysis of Signal Transduction Networks. IEEE Control Systems Magazine Conference Paper (3)
19.
Conference Paper
Chemical Reaction Network Theory: a tool for systems biology. In: 5th MATHMOD: Full Paper CD, p. SP22_267_P. 5th MATHMOD, Vienna, Austria, February 08, 2006 - February 10, 2006. (2006)
20.
Conference Paper
Using chemical reaction network theory to discard a kinetic mechanism hypothesis. In: Foundations of Systems Biology in Engineering, FOSBE 2005, pp. 325 - 328. Foundations of Systems Biology in Engineering, Santa Barbara, August 07, 2005 - August 10, 2005. (2005)