Publications of Dirk Benndorf

Benndorf, D.; Heyer, R.; Kohrs, F.; Schallert, K.; Muth, T.; Reichl, U.: The MetaProteomeAnalyzer software provides a complete workflow for analysis of metaproteomic data in microbiome research. International de.NBI-Symposium "Bioinformatics for Human Health & Disease", Heidelberg, Germany (2016)

Heyer, R.; Kohrs, F.; Benndorf, D.; De Vrieze , J.; Rapp, E.; Schlüter, A.; Sczyrba, A.; Boon, N.: A metaproteomic approach for analysis of microbial community structure and function for improvement of biogas plant performance. Symposium on Advances and Applications in Metaproteomics, Magdeburg, Germany (2016)

Koch, S.; Benndorf, D.; Reichl, U.; Klamt, S.: New Methods for Modeling of Microbial Communities with Stoichiometric Metabolic Models. 6th International Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany (2016)

Heyer, R.; Kohrs, F.; Benndorf, D.; De Vrieze, J.; Rapp, E.; Boon, N.; Reichl, U.: A metaproteomic approach for analysis of microbial community structure and function for improvement of biogas plant performance. 6th Congress of European Microbiologists (FEMS 2015), Maastricht, Netherlands (2015)

Koch, S.; Benndorf, D.; Reichl, U.; Klamt, S.: Prediction of Community Compositions in Stoichiometric Community Models. 4th Conference on Constraint-Based Reconstruction and Analysis, Heidelberg, Germany (2015)

Muth, T.; Behne, A.; Heyer, R.; Kohrs, F.; Hoffmann, M.; Benndorf, D.; Lehtevä, M.; Reichl, U.; Martens, L.; Rapp, E.: Metaproteomeanalyzer: a software tool for functional and taxonomic characterization of metaproteome data. Konferenz Proteomic Forum, Berlin (2015)

Püttker, S.; Kohrs, F.; Benndorf, D.; Heyer, R.; Rapp, E.; Reichl, U.: Analyses of activated sludge metaproteomes of a wastewater treatment plant a metaproteomic data set. 6th Congress of European Microbiologists - FEMS Microbiology Congress 2015, Maastricht, Belgien (2015)

Bensmann, A.; Hanke-Rauschenbach, R.; Heyer, R.; Kohrs, F.; Benndorf, D.; Reichl, U.; Sundmacher, K.: Methanisierung von erneuerbarem Wasserstoff in Biogas-Anlagen,. ProcessNet-Anual Meeting, Aachen, Germany (2014)

Kohrs, F.; Benndorf, D.; Heyer, R.; Rapp, E.; Reichl, U.: Metaproteomics for Process Monitoring of Biogas Plants. ProcessNet-Jahrestagung und 31. DECHEMA-Jahrestagung der Biotechnologen 2014, Aachen, Germany (2014)

Kohrs, F.; Benndorf, D.; Klocke, M.; Rapp, E.; Reichl, U.: Metaproteomics for Process Monitoring of Biogas Plants. DECHEMA Himmelfahrtstagung 2014 (Biomaterials-Made in Bioreactors), Radebeul, Germany (2014)

Heyer, R.; Muth, T.; Behne, A.; Kohrs, F.; Benndorf, D.; Kausmann, R.; Heiermann, M.; Klocke, M.; Rapp, E.; Reichl, U.: METAPROTEOMEANALYZER: A SOFTWARE TOOL FOR FUNCTIONAL AND TAXONOMIC CHARACTERIZATION OF METAPROTEOME DATA. Annual Conference of the Association for General and Applied Microbiology (VAAM), Bremen, Germany (2013)

Heyer, R.; Muth, T.; Kohrs, F.; Behne, A.; Benndorf, D.; Martens , L.; Klocke, M.; Rapp, E.; Reichl, U.: Biogas plant metaproteome analysis and biomarker search by using the software MetaProteomeAnalyser. 5th Congress of European Microbiologists (FEMS 2013), Leipzig, Germany (2013)

Kluge, S.; Rapp, E.; Benndorf, D.; Genzel, Y.; Scharfenberg, K.; Reichl, U.: Proteomic monitoring along the adaptation of MDCK cells from adherent to suspension growth with respect to influenza virus vaccine production. 23rd ESACT Meeting , Lille, France (2013)

Kluge, S.; Rourou, S.; Vester, D.; Majoul, S.; Benndorf, D.; Genzel, Y.; Rapp, E.; Kallel, H.; Reichl, U.: Exploring virus-host cell interaction on the proteome level: Rabies virus replication in Vero cells. Proteomic Forum 2013, Berlin, Germany (2013)

Kohrs, F.; Magnussen, A.; Benndorf, D.; Heyer, R.; Klocke, M.; Rapp, E.; Reichl, U.: Evaluation of multidimensional separation techniques to increase identification of proteins from anaerobic digesters. Annual Conference of the Association for General and Applied Microbiology (VAAM), Bremen (Germany) (2013)

Muth, T.; Heyer, R.; Behne, A.; Kohrs, F.; Benndorf, D.; Rapp, E.; Reichl, U.: Meta-Proteome-Analyzer: A software tool specifically developed for the functional and taxonomic characterization of metaproteome data. GCB2012: German conference on bioinformatics, Jena, Germany (2012)

Kluge, S.; Hoffmann, M.; Rapp, E.; Benndorf, D.; Reichl, U.: Proteome analysis of a bacterial mixed culture. Proteomic Forum 2011, Berlin (2011)

Hellwig, P.; Dittrich, A.; Heyer, R.; Reichl, U.; Benndorf, D.: Detection, isolation and characterisation of phage-host complexes using BONCAT and click chemistry. bioRxiv (2024)

Van Den Bossche, T.; Kunath, B. J.; Schallert, K.; Schäpe, S. S.; Abraham, P. E.; Armengaud, J.; Arntzen, M. Ø.; Bassignani, A.; Benndorf, D.; Fuchs, S. et al.; Giannone, R. J.; Griffin, T. J.; Hagen, L. H.; Halder, R.; Henry, C.; Hettich, R. L.; Heyer, R.; Jagtap, P.; Jehmlich, N.; Jensen, M.; Juste, C.; Kleiner, M.; Langella, O.; Lehmann, T.; Leith, E.; May, P.; Mesuere, B.; Miotello, G.; Peters, S. L.; Pible, O.; Reichl, U.; Renard, B. Y.; Schiebenhoefer, H.; Scryba, A.; Tanca, A.; Trappe, K.; Trezzi, J.-P.; Uzzau, S.; Verschaffelt, P.; von Bergen, M.; Wilmes, P.; Wolf, M.; Martens, L.; Muth, T.: Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows. bioRxiv (2021)