Publications of Molecular Network Analysis (MNA)

Marwan, W.; Wagler, A.; Weismantel, R.: Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks. Natural Computing 10 (2), pp. 639 - 654 (2011)

Andres, C.; Meyer, S.; Dina, O. A.; Levine, J. D.; Hucho, T.: Quantitative automated microscopy (QuAM) elucidates growth factor specific signalling in pain sensitization. Molecular Pain 6, 98 (2010)

Barrantes Bustinza, I. W.; Glockner, G.; Meyer, S.; Marwan, W.: Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum. BMC Genomics 11, 115 (2010)

Rohr, C.; Marwan, W.; Heiner, M.: Snoopy - a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26 (7), pp. 974 - 975 (2010)

Streif, S.; Oesterhelt, D.; Marwan, W.: A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. BMC Systems Biology 4, 27 (2010)

Schlesner, M.; Miller, A.; Streif, S.; Staudinger, W.; Müller , J.; Scheffer, B.; Siedler, F.; Oesterhelt, D.: Identification of Archaea-specific chemotaxis proteins which interact with the flagellar apparatus. BMC Microbiology 9, 56 (2009)

Streif, S.; Staudinger, W.; Oesterhelt, D.; Marwan, W.: Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking. Review of Scientific Instruments 80, 023709 (2009)

Tesmer, J.; Schnittler, M.: Aquatic protostelids - a study from northeastern Germany. Fungal Ecology 2, pp. 140 - 144 (2009)

Glöckner, G.; Golderer, G.; Werner-Felmayer, G.; Meyer, S.; Marwan, W.: A first glimpse at the transcriptome of Physarum polycephalum. BMC Genomics 9, 6 (2008)

Streif, S.; Staudinger, W.; Marwan, W.; Oesterhelt, D.: Flagellar Rotation in the Archaeon Halobacterium salinarum Depends on ATP. Journal of Molecular Biology 384 (1), pp. 1 - 8 (2008)

Blätke, M. A.; Meyer, S.; Marwan, W.: Pain Signaling - A Case Study of the Modular Modeling Voncept with Prospect to a Protein-Oriented Modeling Platform. In: Proceedings of the International Workshop on Biological Processes & Petri Nets, Vol. 724, pp. 117 - 134 (Eds. Heiner, M.; Hiroshi, M.). International Workshop on Biological Processes & Petri Nets (BioPPN-2011), Newcastle upon Tyne, UK, June 20, 2011 - June 24, 2011. (2011)

Blätke, M. A.; Marwan, W.: Modular and hierarchical modelling concept for large biological Petri nets applied to nociception. In: Proceedings of the 17th German Workshop on Algorithms and Tools for Petri Nets, Vol. 643, pp. 42 - 50 (Eds. Schwarick, M.; Heiner, M.). 17th German Workshop on Algorithms and Tools for Petri Nets (AWPN 2010), Cottbus, October 07, 2010 - October 08, 2010. (2010)

Rohr, C.; Heiner, M.; Marwan, W.: Petri net modeling of cellular signal transduction based on a stochastic version of Snoopy. The 6th Conference on Computational Methods in Systems Biology, Rostock, Germany (2008)