Publications of Former Research Groups

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Journal Article (2)

  1. 2014
    Journal Article
    Liu, F.; Blätke, M. A.; Heiner, M.; Ming, Y.: Modelling and simulating reaction–diffusion systems using coloured Petri nets. Computers in Biology and Medicine (Elmsford, NY) 53, pp. 297 - 308 (2014)
  2. 2013
    Journal Article
    Blätke, M. A.; Dittrich, A.; Rohr, C.; Heiner, M.; Schaper, F.; Marwan, W.: JAK/STAT signalling – an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology. Molecular BioSystems 9 (6), pp. 1290 - 1307 (2013)

Book Chapter (2)

  1. 2015
    Book Chapter
    Blätke, M. A.; Heiner, M.; Marwan, W.: BioModel Engineering with Petri Nets. In: Algebraic and Discrete Mathematical Methods for Modern Biology, pp. 141 - 192. Elsevier, San Diego, USA (2015)
  2. 2014
    Book Chapter
    Blätke, M. A.; Rohr, C.; Heiner, M.; Marwan, W.: A Petri-Net-Based Framework for Biomodel Engineering. In: Large-Scale Networks in Engineering and Life Sciences, pp. 317 - 366. Springer International Publishing, Cham (2014)

Conference Paper (8)

  1. 2015
    Conference Paper
    Beccuti, M.; Blätke, M. A.; Falk, M.; Hardy, S.; Heiner, M.; Maus, C.; Nähring, C.; Rohr, C.: Dictyostelium discoideum: Aggregation and Synchronisation of Amoebas in Time and Space. Dagstuhl Seminar 14481 "Multiscale Spatial Computational Systems Biology", Wadern, Germany, November 23, 2014 - November 28, 2014. Dagstuhl Reports 4 (11), pp. 195 - 214 (2015)
  2. Conference Paper
    Blätke, M. A.; Rohr, C.: A coloured Petri net approach for spatial Biomodel Engineering based on the modular model composition framework Biomodelkit. In: Proceedings of the 6th International Workshop on Biological Processes & Petri Nets co-located with 36th International Conference on Application and Theory of Petri Nets and Concurreny (PETRI NETS 2015), Vol. 1373, pp. 37 - 54. 6th International Workshop on Biological Processes & Petri Nets co-located with 36th International Conference on Application and Theory of Petri Nets and Concurreny (PETRI NETS 2015), Brussels, Belgium, June 21, 2015 - June 26, 2015. (2015)
  3. 2013
    Conference Paper
    Marwan, W.; Blätke, M. A.: A module-based approach to biomodel engineering with Petri Nets. In: Proceedings of the 2012 Winter Simulation Conference (WSC). Winter Simulation Conference (WSC) 2012, Berlin, December 09, 2012 - December 12, 2012. (2013)
  4. 2012
    Conference Paper
    Blätke, M. A.; Heiner, M.; Marwan, W.: Predicting phenotype from genotype through automatically composed Petri nets. 10th International Conference on Computational Methods in Systems Biology, London, UK, October 03, 2012 - October 05, 2012. Computational Methods in Systems Biology. Lecture Notes in Computer Science 7605, pp. 87 - 106 (2012)
  5. Conference Paper
    Blätke, M. A.; Dittrich, A.; Heiner, M.; Schaper, F.; Marwan, W.: JAK-STAT signalling as example for a database-supported modular modelling concept. 10th International Conference on Computational Methods in Systems Biology, London, UK, October 03, 2012 - October 05, 2012. Computational Methods in Systems Biology. Lecture Notes in Computer Science 7605, pp. 362 - 365 (2012)
  6. 2011
    Conference Paper
    Blätke, M. A.; Meyer, S.; Marwan, W.: Pain Signaling - A Case Study of the Modular Modeling Voncept with Prospect to a Protein-Oriented Modeling Platform. In: Proceedings of the International Workshop on Biological Processes & Petri Nets, Vol. 724, pp. 117 - 134 (Eds. Heiner, M.; Hiroshi, M.). International Workshop on Biological Processes & Petri Nets (BioPPN-2011), Newcastle upon Tyne, UK, June 20, 2011 - June 24, 2011. (2011)
  7. 2010
    Conference Paper
    Blätke, M. A.; Marwan, W.: Modular and hierarchical modelling concept for large biological Petri nets applied to nociception. In: Proceedings of the 17th German Workshop on Algorithms and Tools for Petri Nets, Vol. 643, pp. 42 - 50 (Eds. Schwarick, M.; Heiner, M.). 17th German Workshop on Algorithms and Tools for Petri Nets (AWPN 2010), Cottbus, October 07, 2010 - October 08, 2010. (2010)
  8. Conference Paper
    Blätke, M. A.; Meyer, S.; Stein, C.; Marwan, W.: Petri net modeling via a modular and hierarchical approach applied to nociception. In: International Workshop on Biological Processes & Petri Nets (BioPPN), pp. 131 - 143. International Workshop on Biological Processes & Petri Nets (BioPPN), Braga, Portugal, June 21, 2010 - June 25, 2010. (2010)

Meeting Abstract (1)

  1. 2012
    Meeting Abstract
    Blätke, M. A.; Marwan, W.: A database-supported modular modelling platform for systems and synthetic biology. In: Proceedings 3rd International Workshop on Biological Processes & Petri Nets (BioPPN), satellite event of Petri NETS, Vol. 852, pp. 18 - 19. 3rd International Workshop on Biological Processes & Petri Nets (BioPPN), Hamburg, Germany, June 25, 2012. (2012)

Talk (3)

  1. 2015
    Talk
    Blätke, M. A.; Rohr, C.: A coloured Petri net approach for spatial Biomodel Engineering based on the modular model composition framework Biomodelkit. 6th International Workshop on Biological Processes & Petri Nets (BioPPN 2015), Brussels, Belgium (2015)
  2. 2014
    Talk
    Blätke, M. A.: A Modular Framework for Biomodel Engineering. Dagstuhl Seminar 14481 “Multiscale Spatial Computational Systems Biology”, Wadern, Germany (2014)
  3. 2012
    Talk
    Blätke, M. A.; Heiner, M.; Marwan, W.: Predicting phenotype from genotype through automatically composed Petri nets. 10th International Conference on Computational Methods in Systems Biology, London, UK (2012)

Poster (1)

  1. 2012
    Poster
    Blätke, M. A.; Dittrich, A.; Heiner, M.; Schaper, F.; Marwan, W.: JAK-STAT signalling as example for a database-supported modular modelling concept. 10th International Conference on Computational Methods in Systems Biology, London, UK (2012)

Thesis - PhD (1)

  1. 2017
    Thesis - PhD
    Blätke, M. A.: Biomodelkit - a framework for modular biomodel-engineering. Dissertation, 190 pp., Otto-von-Guericke-Universität, Magdeburg (2017)
 
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