Publications of Dirk Benndorf
All genres
Journal Article (54)
21.
Journal Article
11, 233 (2020)
The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12. Frontiers in Microbiology 22.
Journal Article
11, 530 (2020)
Substrate-Dependent Fermentation of Bamboo in Giant Panda Gut Microbiomes: Leaf Primarily to Ethanol and Pith to Lactate. Frontiers in Microbiology 23.
Journal Article
19 (8), pp. 3562 - 3566 (2020)
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis. Journal of Proteome Research 24.
Journal Article
10, 1883 (2019)
A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer. Frontiers in Microbiology 25.
Journal Article
Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants. Microbiome (7), 69 (2019)
26.
Journal Article
15 (2), e1006759 (2019)
RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion. PLoS Computational Biology 27.
Journal Article
201, pp. 93 - 103 (2019)
Metaproteomics of fecal samples of Crohn's disease and Ulcerative Colitis. Journal of Proteomics 28.
Journal Article
13 (4), pp. 1004 - 1018 (2019)
Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. The ISME Journal 29.
Journal Article
19 (2), pp. 439 - 455 (2019)
A robust, cost-effective method for DNA, RNA and protein co-extraction from soil, other complex microbiomes, and pure cultures. Molecular Ecology Resources 30.
Journal Article
10, 1095 (2019)
Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity. Frontiers in Microbiology 31.
Journal Article
90, pp. 685 - 689 (2018)
MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go. Analytical Chemistry 32.
Journal Article
197 (Part 1), pp. 253 - 263 (2018)
Valorisation of deinking sludge as a substrate for lignocellulolytic enzymes production by Pleurotus ostreatus. Journal of Cleaner Production 33.
Journal Article
18 (7), pp. 498 - 509 (2018)
SDS-PAGE fractionation to increase metaproteomic insight into the taxonomic and functional composition of microbial communities for biogas plant samples. Engineering in Life Sciences 34.
Journal Article
261, pp. 24 - 36 (2017)
Challenges and perspectives of metaproteomic data analysis. Journal of Biotechnology 35.
Journal Article
46, pp. 56 - 68 (2017)
Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition. Anaerobe 36.
Journal Article
7, 15783 (2017)
FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics. Scientific Reports 37.
Journal Article
9 (9), 155 (2016)
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. Biotechnology for Biofuels 38.
Journal Article
72 (1), pp. 9 - 13 (2016)
Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarzinii. Microbial Ecology 39.
Journal Article
8 (5), pp. 749 - 763 (2015)
Metaproteomics of complex microbial communities in biogas plants. Microbial Biotechnology 40.
Journal Article
33 (35), pp. 4269 - 4280 (2015)
Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspension. Vaccine