©
Dr.-Ing. Oliver Hädicke
Analysis and Redesign of Biological Networks
Max Planck Institute for Dynamics of Complex Technical Systems
Max Planck Institute for Dynamics of Complex Technical Systems
Main Focus
- Reconstruction and analysis of stoichiometric networks
- Optimization of biotechnological processes
- Analysis of 13C labeling experiments
- Thermodynamic analyses of stoichiometric networks
- Method development for prediction of gene knockout/overexpression candidates for rational strain design
Publications
- Klamt S, Mahadevan R, Hädicke O (2017) When do two-stage processes outperform one-stage processes? Biotechnology Journal, PubMed
- Klamt
S, Hädicke O, Thiele S, von Kamp A (2017) Use of CellNetAnalyzer in
biotechnology and metabolic engineering. Journal of Biotechnology, OpenAccess
- Hädicke O, Klamt S (2017) EColiCore2:
a reference network model of the central metabolism of Escherichia coli
and relationships to its genome-scale parent model. Scientific reports, OpenAccess
- Hädicke O, Klamt S (2015) Manipulation of the ATP pool as a tool for metabolic engineering. Biochemical Society Transactions, PubMed
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Hädicke O, Bettenbrock K, Klamt S (2015) Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli. Biotechnology and Bioengineering 112 (10), PubMed
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Hädicke O, (2014) Modellbasierte Identifizierung von Interventionsstrategien für
Stoffwechselnetzwerke. PhD, 182 pp. Shaker Verlag GmbH, Aachen, OpenAccess
- Klamt
S, Hädicke O, von Kamp A (2014) Stoichiometric and Constraint-Based
Analysis of Biochemical Reaction Networks. Large-Scale Networks in
Engineering and Life Sciences. Edited by Benner P, Findeisen R,
Flockerzi D, Reichl U and Sundmacher K, Springer, pp.263-316. Springer
- Lohr
V, Hädicke O, Genzel Y, Jordan I, Buentemeyer H, Klamt S, Reichl U
(2014) The avian cell line AGE1.CR.pIX characterized my metabolic flux
analysis. BMC Biotechnology 14:72. Open Access
- Gruchattka
E, Hädicke O, Klamt S, Schuetz V, Kayser O (2013) In silicio profiling
of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories.
Microbial Cell Factories 12:84. Open Access
- Hädicke O, Lohr V, Genzel Y, Reichl U, Klamt S
(2013) Evaluating differences of metabolic performances: Statistical
methods and their application to animal cell cultivations. Biotechnology and Bioengineering 10: 2633-2643. PubMed
- Carius L, Hädicke O, Grammel H (2013) Stepwise reduction of the
culture redox potential allows the analysis of microaerobic metabolism
and photosynthetic membrane synthesis in Rhodospirillum rubrum. Biotechnology and Bioengineering 10:573-85. PubMed
- Hädicke O,
Grammel H and Klamt S (2011) Metabolic network modeling of redox
balancing and biohydrogen production in purple nonsulfur bacteria. BMC Systems Biology 5:150. Open Access
- Hädicke O and Klamt S (2011) Computing complex metabolic intervention strategies using constrained minimal cut sets. Metabolic Engineering 13:204-213. PubMed
- Hädicke O and Klamt S (2010) CASOP: a computational approach for strain optimization aiming at high productivity. Journal of Biotechnology 147:88-101. PubMed