deNBI-Workshop: Tools for Systems Biology Modeling and Data Exchange

deNBI-Workshop: Tools for Systems Biology Modeling and Data Exchange

  • Start: Sep 21, 2020 10:00
  • End: Sep 23, 2020 16:00
  • Location: Max Planck Institute Magdeburg
  • Room: Virtual Event
  • Contact: thieles@mpi-magdeburg.mpg.de
 deNBI-Workshop: Tools for Systems Biology Modeling and Data Exchange
New Date: September 21 to 23, 2020

The workshop will be held virtually. All participants will get access to the virtual lectures, exercise courses and discussions.


During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles.

The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks.

The first day SABIO-RK is used as a resource for kinetic data and FAIRDOM Hub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists.

The second day introduces principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer. The third day continues with kinetic modeling techniques which will be illustrated and exercised with COPASI.

Educators:

Steffen Klamt
Axel von Kamp
Sven Thiele
Ursula Kummer
Frank T. Bergmann (de.NBI-SysBio)
Maja Rey
Andreas Weidemann
Ulrike Wittig (HITS)

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