Katja Bettenbrock
Journal Article (42)
1.
Journal Article
17 (1), e14381 (2024)
Construction and comparison of different vehicles for heterologous gene expression in Zymomonas mobilis. Microbial Biotechnology 2.
Journal Article
Experimentally implemented dynamic optogenetic optimization of ATPase expression using knowledge-based and Gaussian-process-supported models. Process Biochemistry (143), pp. 174 - 185 (2024)
3.
Journal Article
121 (1), pp. 366 - 379 (2024)
Toward a modeling, optimization, and predictive control framework for fed-batch metabolic cybergenetics. Biotechnology and Bioengineering 4.
Journal Article
23, 143 (2024)
A new Zymomonas mobilis platform strain for the efficient production of chemicals. Microbial Cell Factories 5.
Journal Article
13 (1), 18274 (2023)
Integrated biophysical matching of bacterial nanocellulose coronary artery bypass grafts towards bioinspired artery typical functions. Scientific Reports 6.
Journal Article
11 (11), pp. 3855 - 3864 (2022)
Zymo-Parts: A Golden Gate Modular Cloning Toolbox for Heterologous Gene Expression in Zymomonas mobilis. ACS Synthetic Biology 7.
Journal Article
73, pp. 50 - 57 (2022)
Enabling anaerobic growth of Escherichia coli on glycerol in defined minimal medium using acetate as redox sink. Metabolic Engineering 8.
Journal Article
68 (4), e17555 (2022)
Maximizing batch fermentation efficiency by constrained model-based optimization and predictive control of adenosine triphosphate turnover. AIChE-Journal 9.
Journal Article
21, 67 (2022)
Is energy excess the initial trigger of carbon overflow metabolism? Transcriptional network response of carbon-limited Escherichia coli to transient carbon excess. Microbial Cell Factories 10.
Journal Article
11 (6), 726 (2021)
Characterization of an Immobilized Amino Acid Racemase for Potential Application in Enantioselective Chromatographic Resolution Processes. Catalysts 11.
Journal Article
20 (12), pp. 550 - 561 (2020)
Immobilization of an amino acid racemase for application in crystallization‐based chiral resolutions of asparagine monohydrate. Engineering in Life Sciences 12.
Journal Article
322 (10), pp. 54 - 65 (2020)
Synthesis of lipid-linked oligosaccharides by a compartmentalized multi-enzyme cascade for the in vitro N-glycosylation of peptides. Journal of Biotechnology 13.
Journal Article
11, 233 (2020)
The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12. Frontiers in Microbiology 14.
Journal Article
10, 2533 (2019)
Improvement of Acetaldehyde Production in Zymomonas mobilis by Engineering of Its Aerobic Metabolism. Frontiers in Microbiology 15.
Journal Article
115 (1), pp. 156 - 164 (2018)
Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and Bioengineering 16.
Journal Article
17, 132 (2018)
Type and capacity of glucose transport influences succinate yield in two-stage cultivations. Microbial Cell Factories 17.
Journal Article
13 (4), 20194699 (2018)
All three quinone species play distinct roles in ensuring optimal growth under aerobic and fermentative conditions in E. coli K 12. PLoS One 18.
Journal Article
112 (9), pp. 1984 - 1996 (2017)
Bistability and Nonmonotonic Induction of the lac Operon in the Natural Lactose Uptake System. Biophysical Journal 19.
Journal Article
38, pp. 29 - 37 (2016)
Model-Based metabolic engineering enables high yield itaconic acid production by Escherichia coli. Metabolic Engineering 20.
Journal Article
11 (4), pp. 453 - 463 (2016)
Racemization of undesired enantiomers: Immobilization of mandelate racemase and application in a fixed bed reactor. Biotechnology Journal 21.
Journal Article
112 (10), pp. 2195 - 2199 (2015)
Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli. Biotechnology and Bioengineering 22.
Journal Article
5, 124 (2014)
A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen. Frontiers in Microbiology 23.
Journal Article
9 (9), e107640 (2014)
Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions. PLoS One 24.
Journal Article
9 (1), e87307 (2014)
Analysis of Escherichia coli Mutants with a Linear Respiratory Chain. PLoS One 25.
Journal Article
4 (69), pp. 36471 - 36479 (2014)
Combined electrochemical and microscopic study of porous enzymatic electrodes with direct electron transfer mechanism. RSC Advances 26.
Journal Article
1833 (12), pp. 2879 - 2889 (2013)
A role for EIIANtr in controlling fluxes in the central metabolism of E. coli K12. Biochimica et Biophysica Acta-Molecular Cell Research 27.
Journal Article
8 (10), e7541 (2013)
Kinase activity of ArcB from Escherichia coli is subject to regulation by both ubiquinone and demethylmenaquinone. PLoS One 28.
Journal Article
2 (4), pp. 844 - 871 (2012)
Analysis and Design of Stimulus Response Curves of E. coli. Metabolites 29.
Journal Article
157 (1), pp. 82 - 88 (2012)
Iac operon induction in Escherichia coli: Systematic comparison of IPTG and TMG induction and influence of the transacetylase LacA. Journal of Biotechnology 30.
Journal Article
194 (21), pp. 5897 - 5908 (2012)
Glucose transport in Escherichia coli mutant strains with defects in sugar transport systems. Journal of Bacteriology 31.
Journal Article
154 (1), pp. 35 - 45 (2011)
Characterization of E. coli MG1655 and frdA and sdhC mutants at various aerobiosis levels. Journal of Biotechnology 32.
Journal Article
168 (1-2), pp. 63 - 71 (2010)
Real-time RT-qPCR assay for the analysis of human influenza A virus transcription and replication dynamics. Journal of Virological Methods 33.
Journal Article
276 (2), pp. 594 - 602 (2009)
Catabolite repression in Escherichia Coli - a comparison of modelling approaches. FEBS Journal 34.
Journal Article
24, pp. 704 - 710 (2008)
A feed-forward loop guarantees robust behavior in Echerichia coli carbohydrate uptake. Bioinformatics 35.
Journal Article
189 (19), pp. 6891 - 6900 (2007)
Correlation between growth rates, EIIACrr phosphorylation, and intracellular cAMP levels in Escherichia coli K-12. Journal of Bacteriology 36.
Journal Article
1, 42 (2007)
Analysis of global control of Escherichia coli carbohydrate uptake. BMC Systems Biology 37.
Journal Article
281, pp. 2578 - 2584 (2006)
A quantitative approach to catabolite repression in Escherichia coli. Journal of Biological Chemistry 38.
Journal Article
73 (1), pp. 57 - 71 (2004)
Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism. Biosystems 39.
Journal Article
24 (4), pp. 35 - 52 (2004)
Modular Analysis of Signal Transduction Networks. IEEE Control Systems Magazine 40.
Journal Article
420 (6912), pp. 190 - 193 (2002)
Metabolic network structure determines key aspects of functionality and regulation. Nature 41.
Journal Article
3 (4), pp. 362 - 379 (2001)
The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactose. Metabolic Engineering 42.
Journal Article
6 (1/2), pp. 29 - 36 (2001)
Systemorientierte Bioprozesstechnik: interdisziplinäre Forschung in Biologie, System- und Computerwissenschaften. Magdeburger Wissenschaftsjournal Book Chapter (4)
43.
Book Chapter
77, pp. 37 - 88 (Ed. Poole, R. K.). Academic Press (2020)
Zymomonas mobilis metabolism: Novel tools and targets for its rational engineering. In: Advances in Microbial Physiology, Vol. 44.
Book Chapter
64, pp. 65 - 114 (Ed. Poole, R. K.). Elsevier/Academic Press, Amsterdam (2014)
Towards a Systems Level Understanding of the Oxygen Response of Escherichia coli. In: Advances in Microbial Physiology, Vol. 45.
Book Chapter
Metabolic networks: Biology meets engineering sciences. In: Systems Biology: Definitions and Perspectives, pp. 215 - 234 (Eds. Alberghina, L.; Westerhoff, H. V.). Springer, Berlin [u.a.] (2005)
46.
Book Chapter
Towards a Virtual Biological Laboratory. In: Foundations of systems biology, pp. 189 - 212 (Ed. Kitano, H.). MIT Press, Cambridge/Massachusetts (2001)
Conference Paper (9)
47.
Conference Paper
Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. In: 33rd European Symposium on Computer Aided Chemical Engineering, pp. 2601 - 2606 (Eds. Kokossis, A.; Georgiadis, M. C.; Pistikopoulos, E.). 33rd European Symposium on Computer Aided Process Engineering, Athen, Greece, June 18, 2023 - June 21, 2023. Elsevier, Amsterdam, Netherlands (2023)
48.
Conference Paper
56 (2), pp. 4608 - 4613 (2023)
Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC-PapersOnLine 49.
Conference Paper
55, pp. 174 - 180. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea, June 14, 2022 - June 17, 2022. (2022)
Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. In: IFAC-PapersOnLine, Vol. 50.
Conference Paper
55 (23), pp. 98 - 103 (2022)
Soft sensor for monitoring dyamic changes in cell composition. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine 51.
Conference Paper
Combination of Preferential Crystallization and Racemization – First Results. In: BIWIC 2016, 23rd International Workshop on Industrial Crystallization, pp. 173 - 178. BIWIC 2016 - 23rd International Workshop on Industrial Crystallization, Magdeburg, Germany, September 06, 2016 - September 08, 2016. Cuvillier, Göttingen (2016)
52.
Conference Paper
48 (1), pp. 23 - 28 (2015)
A compact mathematical model of mandelate racemase production and chaperone overexpression in E. coli. 8th Vienna Interantional Conference on Mathematical Modelling , Vienna, Austria, February 18, 2015 - February 20, 2015. IFAC-PapersOnLine 53.
Conference Paper
Towards whole cell in silico models for cellular systems: model set-up and model validation. In: Positive systems: proceedings of the First Multidisciplinary International Symposium on Positive Systems (POST 2003), pp. 92 - 102 (Eds. Benvenuti, L.; de Santis, A.; Farina, L.). First Multidisciplinary International Symposium on Positive Systems (POST 2003), Rome, Italy, August 28, 2003 - August 30, 2003. (2003)
54.
Conference Paper
Analysis of the dynamics of the Escherichia coli glucose PTS in different time windows. In: Abstracting and synthesizing the principles of living systems: Fifth German Workshop on Artificial Life, pp. 33 - 42 (Eds. Polani, D.; Kim, J.; Martinetz, T.). Fifth German Workshop on Artificial Life, Luebeck, Germany, March 18, 2002 - March 20, 2002. (2002)
55.
Conference Paper
Control of Glucose and Lactose Uptake in E. coli. In: Proceedings of the 4th International Congress on Biochemical Engineering, pp. 304 - 308. International Congress on Biochemical Engineering, Stuttgart, Germany, February 17, 2000 - February 18, 2000. Fraunhofer IRB Verlag, Stuttgart (2000)
Meeting Abstract (1)
56.
Meeting Abstract
YIELD ENHANCEMENT OF THE PRODUCTION OF MANDELIC ACID ENANTIOMERS BY COUPLING OF ENANTIOSELECTIVE CHROMATOGRAPHY WITH ENZYMATIC RACEMIZATION. In ECCE10+ECAB3+EPIC5 Chemical Engineering and Biochemical Engineering for a new sustainable process industry in Europe, p. 132 - 132. ECAB3 - 3rd European Congress of Applied Biotechnology, Nice, France, September 27, 2015 - October 01, 2015. (2015)
Talk (12)
57.
Talk
Improved provision of pure enantiomers by coupling separation, racemizaton and recycling processes. 5th Indo-German Workshop on Advances in Materials, Reaction, and Separation Processes, Kharagpur, India (2024)
58.
Talk
Improved provision of pure enantiomers by coupling separation, racemizaton and recycling processes. ISCRE28 – International Symposium on Chemical Reaction Engineering 2024, Turku/Åbo, Finland (2024)
59.
Talk
Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. 33rd European Symposium on Computer-Aided Process Engineering (ESCAPE-33), Athens, Greece (2023)
60.
Talk
Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC World Congress 2023, Yokohama, Japan (2023)
61.
Talk
Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea (2022)
62.
Talk
Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Himmelfahrtstagung "Models for Developing and Optimising Biotech Production", Neu-Ulm, Germany (2017)
63.
Talk
Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Systems Biology meets Synthetic Biology, Frankfurt am Main, Germany (2017)
64.
Talk
Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), Jena, Germany (2016)
65.
Talk
Resolution of Mandelic Acid Enantiomers by Coupling Separation with Enantioselective Chromatography and Enzymatic Racemization. PREP 2016 - 29th International Symposium on Preparative and Process Chromatography, Philadelphia, USA (2016)
66.
Talk
YIELD ENHANCEMENT OF THE PRODUCTION OF MANDELIC ACID ENANTIOMERS BY COUPLING OF ENANTIOSELECTIVE CHROMATOGRAPHY WITH ENZYMATIC RACEMIZATION. ECAB3 - 3rd European Congress of Applied Biotechnology, Nice, France (2015)
67.
Talk
Resolution of mandelic acid enantiomers using enantioselective chromatography coupled with enzymatic racemization. biocat2014 - 7th International Congress on Biocatalysis 2014, Hamburg, Germany (2014)
68.
Talk
Thermodynamically-Consistent Reduced-Order Modeling of the Oxygen Response of Escherichia coli. 9th International Conference on Systems Biology (ICSB 2008), Göteborg, Sweden (2008)
Poster (20)
69.
Poster
Investigation of an Amino Acid Racemase for Enantioseparation Using Preferential Crystallization – First Results. biocat2016 - 8th International Congress on Biocatalysis 2016, Hamburg, Germany (2016)
70.
Poster
Combination of Preferential Crystallization and Racemization – First Results. BIWIC 2016 - 23rd International Workshop on Industrial Crystallization, Magdeburg, Germany (2016)
71.
Poster
Model-Based Metabolic Engineering of Escherichia coli for High Yield Itaconic Acid Production. Metabolic Engineering 11, Kobe, Japan (2016)
72.
Poster
Model-Based Metabolic Engineering of Escherichia Coli for High Yield Itaconic Acid Production. 6th International Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany (2016)
73.
Poster
Coupled Enzymatic Racemization and Chromatographic Separation for Yield Enhancement of Mandelic Acid Resolution. biocat2016 - 8th International Congress on Biocatalysis 2016, Hamburg, Germany (2016)
74.
Poster
Enzymatic Racemization to Recycle of Undesired Enantiomer in Chiral Separation. PREP 2016 - 29th International Symposium on Preparative and Process Chromatography, Philadelphia, USA (2016)
75.
Poster
Immobilized mandelate racemase performance for dynamic resolution of mandelic acid. 3rd Multistep Enzyme Catalyzed Processes Congress (MECP14), Madrid, Spain (2014)
76.
Poster
WPB1: Quantitative analysis of specific regulation and global control of carbohydrate metabolism in E. coli. Status Seminar and Evaluation of FORSYS, Heidelberg, Germany (2009)
77.
Poster
The nitrogen PTS in E. coli - a candidate for a regulatory connection between carbon and nitrogen metabolism? German Symposium on Systems Biology, Heidelberg, Germany (2009)
78.
Poster
Deletion of ptsN in Escherichia coli LJ110 correlates with higher acetate formation and slower growth. VAAM-Jahrestagung 2009, Bochum, Germany (2009)
79.
Poster
Realtime-PCR-assay for the quantitative analysis of human influenza A virus replication: validation of an assay for vRNA, cRNA \& mRNA polarity specific primers. Dechema 2009 Event, Mannheim, Germany (2009)
80.
Poster
Investigation of the Escherichia coli lac operon on population and on single cell level. FEMS Meeting 2009, Götheburg, Schweden (2009)
81.
Poster
Investigations of the Escherichia coli lac operon. German Symposium on Systems Biology, Heidelberg, Germany (2009)
82.
Poster
Comparison of the growth behavior of the wildtype strain Escherichia coli LJ110 and of mutants in the nitrogen- PTS. 27th Symposium - Mechanisms of Gene Regulation, Witzenhausen, Germany (2008)
83.
Poster
Single cell studies of the Escherichia coli lac operon. 27th Symposium - Mechanisms of Gene Regulation, Witzenhausen, Germany (2008)
84.
Poster
Growth of Escherichia coli LJ110 depending on nitrogen- and carbon source. VAAM/GBM-Jahrestagung, Frankfurt a.M., Germany (2008)
85.
Poster
Characterisation of metabolic mutants with respect to their growth behaviour with different oxygen availabilities. Jahrestagung der Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM), Frankfurt a.M., Germany (2008)
86.
Poster
Metabolism-Wide Oxygen Responses: Experimental and Modelling Approaches. SysMo - Evaluation Conference, Bad Honnef, Germany (2008)
87.
Poster
Development of a real-time PCR assay for quantitative analysis of human influenza A virus replication. qPCR 2007 Event, Freising-Weihenstephan, Germany (2007)
88.
Poster
Real-Time PCR for quantitative analysis of human influenza A virus in infected mammalian cells. GVC/DECHEMA-Jahrestagungen 2006, Wiesbaden, Germany (2006)