Publikationen von Axel Kamp von
Alle Typen
Zeitschriftenartikel (21)
2023
Zeitschriftenartikel
39 (10), btad600 (2023)
Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysis. Bioinformatics 2022
Zeitschriftenartikel
12 (7), 585 (2022)
Analyzing and Resolving Infeasibility in Flux Balance Analysis of Metabolic Networks. Metabolites
Zeitschriftenartikel
38 (21), S. 4981 - 4983 (2022)
StrainDesign: a Comprehensive Python Package for Computational Design of Metabolic Networks. Bioinformatics
Zeitschriftenartikel
38 (5), S. 1467 - 1469 (2022)
CNApy: a CellNetAnalyzer GUI in Python for Analyzing and Designing Metabolic Networks. Bioinformatics 2020
Zeitschriftenartikel
9 (3), S. 556 - 566 (2020)
MEMO: A Method for Computing Metabolic Modules for Cell-Free Production Systems. ACS Synthetic Biology
Zeitschriftenartikel
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinformatics (21), 510 (2020)
Zeitschriftenartikel
16 (7), e1008110 (2020)
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets. PLoS Computational Biology 2019
Zeitschriftenartikel
25 (2), S. 156 - 158 (2019)
Computergestütztes Design mikrobieller Zellfabriken. Biospektrum 2018
Zeitschriftenartikel
14 (9), e1006492 (2018)
OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. PLoS Computational Biology
Zeitschriftenartikel
9, 5332 (2018)
MoVE identifies metabolic valves to switch between phenotypic states. Nature Communications 2017
Zeitschriftenartikel
8, 15926 (2017)
Growth-coupled overproduction is feasible for almost all metabolites in five major production organisms. Nature Communications
Zeitschriftenartikel
261, S. 221 - 228 (2017)
Use of CellNetAnalyzer in biotechnology and metabolic engineering. Journal of Biotechnology 2016
Zeitschriftenartikel
2, 16032 (2016)
MUFINS: multi-formalism interaction network simulator. npj Systems Biology and Applications 2015
Zeitschriftenartikel
31 (17), S. 2844 - 2851 (2015)
Genome-scale strain designs based on regulatory minimal cut sets. Bioinformatics 2014
Zeitschriftenartikel
10 (1), e1003378 (2014)
Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks. PLoS Computational Biology 2013
Zeitschriftenartikel
7, S. 135 (2013)
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formlisms and tools. BMC Systems Biology 2012
Zeitschriftenartikel
28 (3), S. 381 - 387 (2012)
Minimal cut sets in metabolic networks are elementary modes in a dual network. Bioinformatics 2011
Zeitschriftenartikel
105 (2), S. 162 - 168 (2011)
An application programming interface for CellNetAnalyzer. Biosystems 2010
Zeitschriftenartikel
17 (1), S. 39 - 53 (2010)
Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. Journal of Computational Biology 2009
Zeitschriftenartikel
10, S. 181 (2009)
Computing Paths and Cycles in Biological Interaction Graphs. BMC Bioinformatics