deNBI-Workshop: Tools for systems biology modeling and data exchange: CellNetAnalyzer/CNApy, COPASI, SABIO-RK, FAIRDOMHub/SEEK

During this 3-day course, attendees will learn basic techniques for modeling of biochemical networks including data access and storage due to the FAIR principles.

The first day introduces principles of stoichiometric and constraint-based modeling coupled with hands on exercises using CellNetAnalyzer and CNApy.

The second day continues with kinetic modeling techniques which will be illustrated and exercised with COPASI.

The third day SABIO-RK is used as a resource for kinetic data and FAIRDOM Hub/SEEK is introduced as a data and model management platform fitted to the needs of systems biologists. The hands on exercises throughout the three days will ensure that attendees become familiar with the software tools and with analyzing, creating, editing, importing, simulating and storing biochemical networks.

Educators:
Pavlos Bekiaris, Axel von Kamp, Steffen Klamt (MPI Magdeburg)
Frank T. Bergmann, Ursula Kummer (Heidelberg University)
Wolfgang Müller, Maja Rey, Andreas Weidemann, Ulrike Wittig (HITS) (de.NBI-SysBio)