Publikationen von S. Klamt

Klamt, S.; Gilles, E. D.: Minimal cut sets in biochemical reaction networks. Bioinformatics 20, S. 226 - 234 (2004)

Kremling, A.; Ginkel, M.; Klamt, S.; Gilles, E. D.: Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology 46, S. 12 - 19 (2004)

Papin, J. A.; Stelling, J.; Price, N. D.; Klamt, S.; Schuster, S.; Palsson, B. O.: Comparison of network-based pathway analysis methods. Trends in Biotechnology 22 (8), S. 400 - 405 (2004)

Klamt, S.; Stelling, J.: Two approaches for metabolic pathway analysis? Trends in Biotechnology 21 (2), S. 64 - 69 (2003)

Klamt, S.; Stelling, J.; Ginkel, M.; Gilles, E. D.: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 19 (2), S. 261 - 269 (2003)

Klamt, S.; Schuster, S.: Calculating as many fluxes as possible in underdetermined metabolic networks. Molecular Biology Reports 29 (1-2), S. 243 - 248 (2002)

Klamt, S.; Schuster, S.; Gilles, E. D.: Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnology and Bioengineering 77 (7), S. 734 - 751 (2002)

Klamt, S.; Stelling, J.: Combinatorial complexity of pathway analysis in metabolic networks. Molecular Biology Reports 29 (1-2), S. 233 - 236 (2002)

Schuster, S.; Klamt, S.: Applying metabolic pathway analysis to make good use of methanol. Trends in Biotechnology 20 (8), S. 322 (2002)

Schuster, S.; Klamt, S.; Weckwerth, W.; Moldenhauer, F.; Pfeiffer, T.: Use of network analysis of metabolic systems in bioengineering. Bioprocess and Biosystems Engineering 24 (6), S. 363 - 372 (2002)

Stelling, J.; Klamt, S.; Bettenbrock, K.; Schuster, S.; Gilles, E. D.: Metabolic network structure determines key aspects of functionality and regulation. Nature 420 (6912), S. 190 - 193 (2002)

Klamt, S.; Haedicke, O.; von Kamp, A.: Stoichiometric and Constraint-Based Analysis of Biochemical Reaction Networks. In: Large-Scale Networks in Engineering and Life Sciences, S. 263 - 316. Springer International Publishing, Cham (2014)

Heise, S.; Flassig, R.; Klamt, S.: Benchmarking a Simple Yet Effective Approach for Inferring Gene Regulatory Networks from Systems Genetic Data. In: Gene Network Inference: Verification of Methods for Systems Genetic Data., S. 33 - 47. Springer, Heidelberg (2013)

Waddell, S. J.; Kamp von, A.; Klamt, S.; Neyrolles, O.: Host-pathogen interactions. In: Systems Biology of Tuberculosis, S. 107 - 126. Springer, New York (2013)

Espinel-Rios, S.; Bettenbrock, K.; Klamt, S.; Avalos, J. L.; Findeisen, R.: Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. In: 33rd European Symposium on Computer Aided Chemical Engineering, S. 2601 - 2606 (Hg. Kokossis, A.; Georgiadis, M. C.; Pistikopoulos, E.). 33rd European Symposium on Computer Aided Process Engineering, Athen, Greece, 18. Juni 2023 - 21. Juni 2023. Elsevier, Amsterdam, Netherlands (2023)

Espinel-Rios, S.; Kok, R.; Klamt, S.; Avalos, J. L.; Findeisen, R.: Batch-to-Batch Optimization with Model Adaptation Leveraging Gaussian Processes: The Case of Optogenetically Assisted Microbial Consortia. In: International Conference on Control, Automation and Systems, S. 1292 - 1297. 23rd International Conference on Control, Automation and Systems, ICCAS 2023, Yeosu, Korea, 17. Oktober 2023 - 20. Oktober 2023. (2023)

Espinel-Rios, S.; Slaviero, G.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC-PapersOnLine 56 (2), S. 4608 - 4613 (2023)

Espinel-Rios, S.; Huber, N.; Alcalá Orozco, E. A.; Morabito, B.; Rexer, T.; Reichl, U.; Klamt, S.; Findeisen, R.: Cell-free biosynthesis meets dynamic optimization and control: a fed-batch framework. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, 28. August 2022 - 31. August 2022. IFAC-PapersOnLine 55 (23), S. 92 - 97 (2022)

Espinel-Rios, S.; Morabito , B.; Pohlodek, J.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. In: IFAC-PapersOnLine, Bd. 55, S. 174 - 180. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea, 14. Juni 2022 - 17. Juni 2022. (2022)

Slaviero, G.; Steuer, R.; Klamt, S.: Using parameter sampling to explore key properties of E. coli's anaerobic metabolism. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, 28. August 2022 - 31. August 2022. IFAC-PapersOnLine 55 (23), S. 109 - 114 (2022)