Publications of S. Klamt
All genres
Journal Article (111)
2004
Journal Article
20, pp. 226 - 234 (2004)
Minimal cut sets in biochemical reaction networks. Bioinformatics
Journal Article
46, pp. 12 - 19 (2004)
Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology
Journal Article
22 (8), pp. 400 - 405 (2004)
Comparison of network-based pathway analysis methods. Trends in Biotechnology 2003
Journal Article
21 (2), pp. 64 - 69 (2003)
Two approaches for metabolic pathway analysis? Trends in Biotechnology
Journal Article
19 (2), pp. 261 - 269 (2003)
FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 2002
Journal Article
29 (1-2), pp. 243 - 248 (2002)
Calculating as many fluxes as possible in underdetermined metabolic networks. Molecular Biology Reports
Journal Article
77 (7), pp. 734 - 751 (2002)
Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnology and Bioengineering
Journal Article
29 (1-2), pp. 233 - 236 (2002)
Combinatorial complexity of pathway analysis in metabolic networks. Molecular Biology Reports
Journal Article
20 (8), p. 322 (2002)
Applying metabolic pathway analysis to make good use of methanol. Trends in Biotechnology
Journal Article
24 (6), pp. 363 - 372 (2002)
Use of network analysis of metabolic systems in bioengineering. Bioprocess and Biosystems Engineering
Journal Article
420 (6912), pp. 190 - 193 (2002)
Metabolic network structure determines key aspects of functionality and regulation. Nature Book Chapter (3)
2014
Book Chapter
Stoichiometric and Constraint-Based Analysis of Biochemical Reaction Networks. In: Large-Scale Networks in Engineering and Life Sciences, pp. 263 - 316. Springer International Publishing, Cham (2014)
2013
Book Chapter
Benchmarking a Simple Yet Effective Approach for Inferring Gene Regulatory Networks from Systems Genetic Data. In: Gene Network Inference: Verification of Methods for Systems Genetic Data., pp. 33 - 47. Springer, Heidelberg (2013)
Book Chapter
Host-pathogen interactions. In: Systems Biology of Tuberculosis, pp. 107 - 126. Springer, New York (2013)
Conference Paper (10)
2023
Conference Paper
Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. In: 33rd European Symposium on Computer Aided Chemical Engineering, pp. 2601 - 2606 (Eds. Kokossis, A.; Georgiadis, M. C.; Pistikopoulos, E.). 33rd European Symposium on Computer Aided Process Engineering, Athen, Greece, June 18, 2023 - June 21, 2023. Elsevier, Amsterdam, Netherlands (2023)
Conference Paper
Batch-to-Batch Optimization with Model Adaptation Leveraging Gaussian Processes: The Case of Optogenetically Assisted Microbial Consortia. In: International Conference on Control, Automation and Systems, pp. 1292 - 1297. 23rd International Conference on Control, Automation and Systems, ICCAS 2023, Yeosu, Korea, October 17, 2023 - October 20, 2023. (2023)
Conference Paper
56 (2), pp. 4608 - 4613 (2023)
Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC-PapersOnLine 2022
Conference Paper
55 (23), pp. 92 - 97 (2022)
Cell-free biosynthesis meets dynamic optimization and control: a fed-batch framework. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine
Conference Paper
55, pp. 174 - 180. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea, June 14, 2022 - June 17, 2022. (2022)
Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. In: IFAC-PapersOnLine, Vol.
Conference Paper
55 (23), pp. 109 - 114 (2022)
Using parameter sampling to explore key properties of E. coli's anaerobic metabolism. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine