Publications of E. D. Gilles

Journal Article (181)

2007
Journal Article
Koschorreck, M., Conzelmann, H., Ebert, S., Ederer, M., & Gilles, E. D. (2007)Reduced modeling of signal transduction - a modular approachBMC Bioinformatics, 8, 336doi: 10.1186/1471-2105-8-336.
Journal Article
Kremling, A., Bettenbrock, K., & Gilles, E. D. (2007)Analysis of global control of Escherichia coli carbohydrate uptakeBMC Systems Biology, 1, 42doi: 10.1186/1752-0509-1-42.
Journal Article
Saez-Rodriguez, J., Simeoni, L., Lindquist, J., Hemenway, R., Bommhardt, U., Arndt, B., Haus, U. U., Weismantel, R., Gilles, E. D., Klamt, S., & Schraven, B. (2007)A logical model provides insights into T cell receptor signalingPLoS Computational Biology, 3, e163doi: 10.1371/journal.pcbi.0030163.
2006
Journal Article
Anders, A., Lilie, H., Franke, K., Kapp, L., Stelling, J., Gilles, E. D., & Breunig, K. D. (2006)The galactose switch in Kluyveromyces lactis depends on nuclear competition between Gal4 and Gal1 for Gal80 bindingThe Journal of Biological Chemistry, 281 (39), 29337–29348doi: 10.1074/jbc.M604271200.
Journal Article
Bettenbrock, K., Fischer, S., Kremling, A., Jahreis, K., Sauter, T., & Gilles, E. D. (2006)A quantitative approach to catabolite repression in Escherichia coliJournal of Biological Chemistry, 281, 2578–2584doi: 10.1074/jbc.M508090200.
Journal Article
Conzelmann, H., Saez-Rodriguez, J., Sauter, T., Kholodenko, B. N., & Gilles, E. D. (2006)A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networksBMC Bioinformatics, 7, 34doi: 10.1186/1471-2105-7-34.
Journal Article
Gilles, E. D. (2006)Signal transduction and regulation in bacteriaComputers and Chemical Engineering, 30 (10-12 ), 1687–1699doi: 10.1016/j.compchemeng.2006.05.042.
Journal Article
Klamt, S., Saez-Rodriguez, J., Lindquist, J., Simeoni, L., & Gilles, E. D. (2006)A methodology for the structural and functional analysis of signaling and regulatory networksBMC Bioinformatics, 7, 56doi: 10.1186/1471-2105-7-56.
Journal Article
Saez-Rodriguez, J., Mirschel, S., Hemenway, R., Klamt, S., Gilles, E. D., & Ginkel, M. (2006)Visual set-up of logical models of signaling and regulatory networks with ProMoTBMC Bioinformatics, 7, 506doi: 10.1186/1471-2105-7-506.
2005
Journal Article
Conradi, C., Saez-Rodriguez, J., Gilles, E. D., & Raisch, J. (2005)Using Chemical Reaction Network Theory to discard a Kinetic Mechanism HypothesisIEE Proceedings Systems Biology, 152 (4), 243–248doi: 10.1049/ip-syb:20050045 .
Journal Article
Mangold, M., Angeles-Palacios, O., Ginkel, M., Kremling, A., Waschler, R., Kienle, A., & Gilles, E. D. (2005)Computer Aided Modeling of Chemical and Biological Systems: Methods, Tools, and ApplicationsIndustrial and Engineering Chemistry Research, 44 (8), 2579–2591doi: 10.1021/ie0496434.
Journal Article
Nutsch, T., Oesterhelt, D., Gilles, E. D., & Marwan, W. (2005)A Quantitative Model of the Switch Cycle of an Archaeal Flagellar Motor and its Sensory ControlBiophysical Journal, 89 (4), 2307–2323doi: 10.1529/biophysj.104.057570.
Journal Article
Saez-Rodriguez, J., Kremling, A., & Gilles, E. D. (2005)Dissecting the Puzzle of Life: Modularization of Signal Transduction NetworksComputers & Chemical Engineering, 29, 619–629doi: 10.1016/j.compchemeng.2004.08.035.
2004
Journal Article
Conzelmann, H., Saez-Rodriguez, J., Sauter, T., Bullinger, E., Allgöwer, F., & Gilles, E. D. (2004)Reduction of Mathematical Models of Signal Transduction Networks: Simulation-Based Approach Applied to EGF Receptor SignallingSystems Biology, 1, 159–169doi: 10.1049/sb:20045011.
Journal Article
Eissing, T., Conzelmann, H., Gilles, E. D., Allgöwer, F., Bullinger, E., & Scheurich, P. (2004)Bistability Analyses of a Caspase Activation Model for Receptor-induced ApoptosisThe Journal of Biological Chemistry, 279, 36892–36897doi: 10.1074/jbc.M404893200.
Journal Article
Gilles, E. D. (2004)Komplexität in Technik und BiologieAkademie-Journal: Magazin der Union der Deutschen Akademien der Wissenschaften, 55–61.
Journal Article
Klamt, S. & Gilles, E. D. (2004)Minimal cut sets in biochemical reaction networksBioinformatics, 20, 226–234doi: 10.1093/bioinformatics/btg395.
Journal Article
Kremling, A., Ginkel, M., Klamt, S., & Gilles, E. D. (2004)Workbench zur Modellbildung, Simulation und Analyse zellulärer Systemeit - Information Technology, 46, 12–19doi: 10.1524/itit.46.1.12.26503 .
Journal Article
Kremling, A., Heermann, R., Centler, F., Jung, K., & Gilles, E. D. (2004)Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coliBiosystems, 78 (1-3), 23–37doi: 10.1016/j.biosystems.2004.06.003.
Journal Article
Kremling, A., Kremling, S., Gadkar, K., Doyle, F. J., Sauter, T., Bullinger, E., Allgoewer, F., & Gilles, E. D. (2004)A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutionsGenome Research, 14 (9), 1773–1785doi: 10.1101/gr.1226004.
Go to Editor View