Publications of Dirk Benndorf

Journal Article (58)

2016
Journal Article
Heyer, R.; Benndorf, D.; Kohrs, F.; De Vrieze, J.; Boon, N.; Hoffmann, M.; Rapp, E.; Schlüter, A.; Sczyrba, A.; Reichl, U.: Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. Biotechnology for Biofuels 9 (9), 155 (2016)
Journal Article
Salerno, C.; Benndorf, D.; Kluge, S.; Palese, L. L.; Reichl, U.; Pollice, A.: Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarzinii. Microbial Ecology 72 (1), pp. 9 - 13 (2016)
2015
Journal Article
Heyer, R.; Kohrs, F.; Reichl, U.; Benndorf, D.: Metaproteomics of complex microbial communities in biogas plants. Microbial Biotechnology 8 (5), pp. 749 - 763 (2015)
Journal Article
Kluge, S.; Benndorf, D.; Genzel, Y.; Scharfenberg, K.; Rapp, E.; Reichl, U.: Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspension. Vaccine 33 (35), pp. 4269 - 4280 (2015)
Journal Article
Muth, T.; Behne, A.; Heyer, R.; Kohrs, F.; Benndorf, D.; Hoffmann, M.; Lehteva, M.; Reichl, U.; Martens, L.; Rapp, E.: The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and Interpretation. Journal of Proteome Research 14 (3), pp. 1557 - 1565 (2015)
Journal Article
Theuerl, S.; Kohrs, F.; Benndorf, D.; Maus, I.; Wibberg, D.; Schlüter, A.; Kausmann, R.; Heiermann, M.; Rapp, E.; Reichl, U. et al.; Pühler, A.; Klocke, M.: Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome. Applied Microbiology and Biotechnology 99 (18), pp. 7791 - 7803 (2015)
2014
Journal Article
Benndorf, D.; Reichl, U.: Proteomics in environmental and technical microbiology. Engineering in Life Sciences 14 (1), pp. 27 - 46 (2014)
Journal Article
Kohrs, F.; Heyer, R.; Magnussen, A.; Benndorf, D.; Muth, T.; Behne, A.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.: Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants. Anaerobe 29, pp. 59 - 67 (2014)
2013
Journal Article
Hanreich, A.; Schimpf, U.; Zakrzewski, M.; Schlüter, A.; Benndorf, D.; Heyer, R.; Rapp, E.; Puhler, A.; Reichl, U.; Klocke, M.: Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Systematic and Applied Microbiology 36 (5), pp. 330 - 338 (2013)
Journal Article
Heyer, R.; Kohrs, F.; Benndorf, D.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.; Reichl, U.: Metaproteome analysis of the microbial communities in agricultural biogas plants. New biotechnology 30 (6), pp. 614 - 622 (2013)
Journal Article
Kluge, S.; Rourou, S.; Vester, D.; Majoul, S.; Benndorf, D.; Genzel, Y.; Rapp, E.; Kallel, H.; Reichl, U.: Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different media. Applied Microbiology and Biotechnology 97 (12), pp. 5493 - 5506 (2013)
Journal Article
Muth, T.; Benndorf, D.; Reichl, U.; Rapp, E.; Martens, L.: Searching for a needle in a stack of needles: challenges in metaproteomics data analysis. Molecular BioSystems 9 (4), pp. 578 - 585 (2013)
2012
Journal Article
Hanreich, A.; Heyer, R.; Benndorf, D.; Rapp, E.; Pioch, M.; Reichl, U.; Klocke, M.: Metaproteome analysis to determine the metabolically active part of thermophilic microbial community producing biogas from agricultural biomass. Canadian Journal of Microbiology 58 (7), pp. 917 - 922 (2012)
Journal Article
Kluge, S.; Hoffmann, M.; Benndorf, D.; Rapp, E.; Reichl, U.: Proteomic tracking and analysis of a bacterial mixed culture. Proteomics 12 (12), pp. 1893 - 1901 (2012)
2011
Journal Article
Kolvenbach, B. A.; Lenz, M.; Benndorf, D.; Rapp, E.; Fousek, J.; Vlcek, C.; Schäffer, A.; Gabriel, F. L.; Kohler, H.-P. E.; Corvini, P. F.: Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3. AMB Express 1, p. 8 (2011)
Journal Article
Kuhn, R.; Benndorf, D.; Rapp, E.; Reichl, U.; Palese, L.; Pollice, A.: Metaproteome analysis of sewage sludge from membrane bioreactors. Proteomics 11 (13), pp. 2738 - 2744 (2011)
2010
Journal Article
Benndorf, D.; Jach, M.; Klamt, S.; Reichl, U.: Systembiologie-Ausbildung von Anfang an. Systembiologie.de (2), pp. 82 - 84 (2010)
Journal Article
Roma-Rodriguesa, C.; Santosa, P.; Benndorf, D.; Rapp, E.; Sá-Correiaa, I.: Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome. Proteomics 73 (8), pp. 1461 - 1478 (2010)

Conference Paper (2)

2019
Conference Paper
Zoun, R.; Schallert, K.; Broneske, D.; Trifonova, I.; Chen, X.; Heyer, R.; Benndorf, D.; Saake, G.: Efficient transformation of protein sequence databases to columnar index schema. In: Database and Expert Systems Applications. DEXA 2019, pp. 67 - 72 (Ed. Anderst-Kotsis , G.). DEXA: International Conference on Database and Expert Systems Applications , Linz, Austria, August 26, 2019 - August 29, 2019. Springer, Cham, Switzerland (2019)
2018
Conference Paper
Zoun, R.; Campero Durand, G.; Schallert , K.; Patrikar, A.; Broneske, D.; Fenske, W.; Heyer, R.; Benndorf, D.; Saake, G.: Protein Identification as a Suitable Application for Fast Data Architecture. DEXA : International Conference on Database and Expert Systems Applications , Regensburg, Germany, September 03, 2018 - September 06, 2018. Database and Expert Systems Applications: DEXA 2018 International Workshops BDMICS, BIOKDD, and TIR 903, pp. 168 - 178 (2018)
Go to Editor View