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Journal Article (181)

  1. Journal Article
    Kremling, A.; Kremling, S.; Sauter, T.; Bettenbrock, K.; Gilles, E. D.: Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism. Biosystems 73 (1), pp. 57 - 71 (2004)
  2. Journal Article
    Mangold, M.; Ginkel, M.; Gilles, E. D.: A model library for membrane reactors implemented in the process modelling tool ProMoT. Computers and Chemical Engineering 28 (3), pp. 319 - 332 (2004)
  3. Journal Article
    Motz, S.; Mannal, S.; Gilles, E. D.: Integral approximation: an approach to reduced models for particulate processes. Chemical Engineering Science 59 (5), pp. 987 - 1000 (2004)
  4. Journal Article
    Saez-Rodriguez, J.; Kremling, A.; Conzelmann, H.; Bettenbrock, K.; Gilles, E. D.: Modular Analysis of Signal Transduction Networks. IEEE Control Systems Magazine 24 (4), pp. 35 - 52 (2004)
  5. Journal Article
    Schmid, J. W.; Mauch, K.; Reuss, M.; Gilles, E. D.; Kremling, A.: Metabolic design based on a coupled gene expression-metabolic network model of tryptophan production in Escherichia coli. Metabolic Engineering 6 (4), pp. 364 - 377 (2004)
  6. Journal Article
    Stelling, J.; Gilles, E. D.: Mathematical Modeling of Complex Regulatory Networks. IEEE Transactions on Nanobioscience 3 (3), pp. 172 - 179 (2004)
  7. Journal Article
    Stelling, J.; Gilles, E. D.; Doyle III, F. J.: Robustness properties of circadian clock architectures. Proceedings of the National Academy of Sciences U.S.A. 101 (36), pp. 13210 - 13215 (2004)
  8. Journal Article
    Ederer, M.; Sauter, T.; Bullinger, E.; Gilles, E. D.; Allgöwer, F.: An approach for dividing models of biological reaction networks into functional units. Simulation: Transactions of the Society for Modeling and Simulation 79 (12), pp. 703 - 716 (2003)
  9. Journal Article
    Ginkel, M.; Kremling, A.; Nutsch, T.; Rehner, R.; Gilles, E. D.: Modular modeling of cellular systems with ProMoT/Diva. Bioinformatics 19, pp. 1169 - 1176 (2003)
  10. Journal Article
    Grammel, H.; Gilles, E. D.; Ghosh, R.: Microaerophilic cooperation of reductive and oxidative pathways allows maximal photosynthetic membrane biosynthesis in Rhodospirillum rubrum. Applied and Environmental Microbiology 69 (11), pp. 6577 - 6586 (2003)
  11. Journal Article
    Grüner, S.; Mohl, K. D.; Kienle, A.; Gilles, E. D.; Fernholz, G.; Friedrich, M.: Nonlinear control of a reactive distillation column. Control Engineering Practice 11 (8), pp. 915 - 925 (2003)
  12. Journal Article
    Hucka, M.; Finney, A.; Sauro, H. M.; Bolouri, H.; Doyle, J. C.; Kitano, H.; Arkin, A. P.; Bornstein, B. J.; Bray, D.; Cornish-Bowden, A. et al.; Cuellar, A. A.; Dronov, S.; Gilles, E. D.; Ginkel, M.; Gor, V.; Goryanin, I. I.; Hedley, W. J.; Hodgman, T. C.; Hofmeyr, J. H.; Hunter, P. J.; Juty, N. S.; Kasberger, J. L.; Kremling, A.; Kummer, U.; Le Novere, N.; Loew, L. M.; Lucio, D.; Mendes, P.; Minch, E.; Mjolsness, E. D.; Nakayama, Y.; Nelson, M. R.; Nielsen, P. F.; Sakurada, T.; Schaff, J. C.; Shapiro, B. E.; Shimizu, T. S.; Spence, H. D.; Stelling, J.; Takahashi, K.; Tomita, M.; Wagner, J.; Wang, J.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19 (4), pp. 524 - 531 (2003)
  13. Journal Article
    Klamt, S.; Stelling, J.; Ginkel, M.; Gilles, E. D.: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 19 (2), pp. 261 - 269 (2003)
  14. Journal Article
    Motz, S.; Mitrovic, A.; Gilles, E. D.; Vollmer, U.; Raisch, J.: Modeling, simulation and stabilizing H-control of an oscillating continuous crystallizer with fines dissolution. Chemical Engineering Science 58 (15), pp. 3473 - 3488 (2003)
  15. Journal Article
    Nutsch, T.; Marwan, W.; Oesterhelt, D.; Gilles, E. D.: Signal processing and flagellar motor switching during phototaxis of Halobacterium salinarum. Genome Research 13 (11), pp. 2406 - 2412 (2003)
  16. Journal Article
    Gilles, E. D.: Regelung – Schlüssel zum Verständnis biologischer Systeme. at - Automatisierungstechnik 50 (1), pp. 7 - 17 (2002)
  17. Journal Article
    Klamt, S.; Schuster, S.; Gilles, E. D.: Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnology and Bioengineering 77 (7), pp. 734 - 751 (2002)
  18. Journal Article
    Mangold, M.; Motz, S.; Gilles, E. D.: A network theory for the structured modelling of chemical processes. Chemical Engineering Science 57 (19), pp. 4099 - 4116 (2002)
  19. Journal Article
    Schoeberl, B.; Eichler-Jonsson, C.; Gilles, E. D.; Müller, G.: Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nature Biotechnology 20 (4), pp. 370 - 375 (2002)
  20. Journal Article
    Stelling, J.; Klamt, S.; Bettenbrock, K.; Schuster, S.; Gilles, E. D.: Metabolic network structure determines key aspects of functionality and regulation. Nature 420 (6912), pp. 190 - 193 (2002)
 
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