Publications of Dirk Benndorf

Journal Article (51)

2014
Journal Article
Kohrs, F.; Heyer, R.; Magnussen, A.; Benndorf, D.; Muth, T.; Behne, A.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.: Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants. Anaerobe 29, pp. 59 - 67 (2014)
2013
Journal Article
Hanreich, A.; Schimpf, U.; Zakrzewski, M.; Schlüter, A.; Benndorf, D.; Heyer, R.; Rapp, E.; Puhler, A.; Reichl, U.; Klocke, M.: Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation. Systematic and Applied Microbiology 36 (5), pp. 330 - 338 (2013)
Journal Article
Heyer, R.; Kohrs, F.; Benndorf, D.; Rapp, E.; Kausmann, R.; Heiermann, M.; Klocke, M.; Reichl, U.: Metaproteome analysis of the microbial communities in agricultural biogas plants. New biotechnology 30 (6), pp. 614 - 622 (2013)
Journal Article
Kluge, S.; Rourou, S.; Vester, D.; Majoul, S.; Benndorf, D.; Genzel, Y.; Rapp, E.; Kallel, H.; Reichl, U.: Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different media. Applied Microbiology and Biotechnology 97 (12), pp. 5493 - 5506 (2013)
Journal Article
Muth, T.; Benndorf, D.; Reichl, U.; Rapp, E.; Martens, L.: Searching for a needle in a stack of needles: challenges in metaproteomics data analysis. Molecular BioSystems 9 (4), pp. 578 - 585 (2013)
2012
Journal Article
Hanreich, A.; Heyer, R.; Benndorf, D.; Rapp, E.; Pioch, M.; Reichl, U.; Klocke, M.: Metaproteome analysis to determine the metabolically active part of thermophilic microbial community producing biogas from agricultural biomass. Canadian Journal of Microbiology 58 (7), pp. 917 - 922 (2012)
Journal Article
Kluge, S.; Hoffmann, M.; Benndorf, D.; Rapp, E.; Reichl, U.: Proteomic tracking and analysis of a bacterial mixed culture. Proteomics 12 (12), pp. 1893 - 1901 (2012)
2011
Journal Article
Kolvenbach, B. A.; Lenz, M.; Benndorf, D.; Rapp, E.; Fousek, J.; Vlcek, C.; Schäffer, A.; Gabriel, F. L.; Kohler, H.-P. E.; Corvini, P. F.: Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3. AMB Express 1, p. 8 (2011)
Journal Article
Kuhn, R.; Benndorf, D.; Rapp, E.; Reichl, U.; Palese, L.; Pollice, A.: Metaproteome analysis of sewage sludge from membrane bioreactors. Proteomics 11 (13), pp. 2738 - 2744 (2011)
2010
Journal Article
Benndorf, D.; Jach, M.; Klamt, S.; Reichl, U.: Systembiologie-Ausbildung von Anfang an. Systembiologie.de (2), pp. 82 - 84 (2010)
Journal Article
Roma-Rodriguesa, C.; Santosa, P.; Benndorf, D.; Rapp, E.; Sá-Correiaa, I.: Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome. Proteomics 73 (8), pp. 1461 - 1478 (2010)

Conference Paper (2)

2019
Conference Paper
Zoun, R.; Schallert, K.; Broneske, D.; Trifonova, I.; Chen, X.; Heyer, R.; Benndorf, D.; Saake, G.: Efficient transformation of protein sequence databases to columnar index schema. In: Database and Expert Systems Applications. DEXA 2019, pp. 67 - 72 (Ed. Anderst-Kotsis , G.). DEXA: International Conference on Database and Expert Systems Applications , Linz, Austria, August 26, 2019 - August 29, 2019. Springer, Cham, Switzerland (2019)
2018
Conference Paper
Zoun, R.; Campero Durand, G.; Schallert , K.; Patrikar, A.; Broneske, D.; Fenske, W.; Heyer, R.; Benndorf, D.; Saake, G.: Protein Identification as a Suitable Application for Fast Data Architecture. DEXA : International Conference on Database and Expert Systems Applications , Regensburg, Germany, September 03, 2018 - September 06, 2018. Database and Expert Systems Applications: DEXA 2018 International Workshops BDMICS, BIOKDD, and TIR 903, pp. 168 - 178 (2018)

Meeting Abstract (1)

2010
Meeting Abstract
Kuhn, R.; Benndorf, D.; Rapp, E.; Reichl, U.; Pollice, A.; Palese, L.: Metaproteomanalyse von Klärschlamm aus Membranbioreaktoren. In Chemie Ingenieur Technik, 82 (9 - Special Issue: ProcessNet-Jahrestagung 2010 und 28. Jahrestagung der Biotechnologen), pp. 1539 - 1540 . Processet-Jahrestagung 2010 und 28. Jahrestagung der Biotechnologen, Aachen, Germany, September 21, 2010 - September 23, 2010. Verlag Chemie, GmbH, Weinheim, Germany (2010)

Talk (30)

2021
Talk
Hellwig, P.; Benndorf, D.; Reichl, U.: Combined metagenomics and metaproteomics of a two-stage biogas plant questions the benefit of the hydrolysis fermenter for process performance. 4th International Metaproteomics Symposium, Luxembourg, 2021, Luxembourg, Luxembourg (2021)
Talk
Khesali Aghtaei, H.; Benndorf, D.; Reichl, U.: Adaptation of a microbial community to demand-oriented biological methanation. V. International Conference on Monitoring & Process Control of Anaerobic Digestion Processes, virtual (2021)
2020
Talk
Benndorf, D.: Was kann die Proteomik zur Klärung des Biogas-Metabolismus leisten? Abschlusssymposium des FNR/BMEL-Verbundvorhabens Modisto „Dynamik des Intermediat-Stoffwechsels in Biogasprozessen“, Virtual Meeting (2020)
2019
Talk
Benndorf, D.: Recent experimental and bioinformatic developments in metaproteomics. Metaproteomics - The Gateway to Microbial Commmunity Structure-Function Analysis, Sheffield, UK (2019)
Talk
Heyer, R.; Biermann, R.; Isermann, B.; Lehmann, T.; Buss, E.; Schallert, K.; Vilchez-Vargas, R.; Sydor, S.; Link, A.; Canbay, A. et al.; Reichl, U.; Benndorf, D.: System diagnostics of the human gut microbiome using metaproteome analysis of fecal samples. Deutscher Kongress für Laboratoriumsmedizin, Magdeburg, Germany (2019)
Talk
Heyer, R.; Schallert, K.; Püttker, S.; Kohrs, F.; Hellwig, P.; Theuerl, S.; Schlüter, A.; Reichl, U.; Benndorf, D.: Identification of process parameters shaping microbial communities in biogas plants using large scale metaproteome analysis. Annual Conference of the Association for General and Applied Microbiology (VAAM), Mainz, Germany (2019)
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