Journal Article (994)

2012
Journal Article
Kolczyk, K.; Samaga, R.; Conzelmann, H.; Mirschel, S.; Conradi, C.: The Process-Interaction-Model: a common representation of rule-based and logical models allows studying signal transduction on different levels of detail. BMC Bioinformatics 13, p. 251 (2012)
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Kremling, A.; Goehler, A.; Jahreis, K.; Nees, M.; Auerbach, B.; Schmidt-Heck, W.; Kökpinar, Ö.; Geffers, R.; Rinas, U.; Bettenbrock, K.: Analysis and Design of Stimulus Response Curves of E. coli. Metabolites 2 (4), pp. 844 - 871 (2012)
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Lohr, V.; Genzel, Y.; Jordan, I.; Katinger, D.; Mahr, S.; Sandig, V.; Reichl, U.: Live attenuated influenza viruses produced in a suspension process with avian AGE1.CR.pIX cells. BMC Biotechnology 12, p. 79 (2012)
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Mangold, M.; Krasnyk, M.: Modellreduktion von Populationssystemen mit Hilfe von Proper Orthogonal Decomposition. At-Automatisierungstechnik 60 (9), pp. 561 - 573 (2012)
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Palis, S.; Kienle, A.: Diskrepanzbasierte Regelung der kontinuierlichen Kristallisation. at - Automatisierungstechnik 60 (3), pp. 145 - 154 (2012)
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Pandelia, M.-E.; Infossi, P.; Stein, M.; Guidici-Orticoni, M.-T.; Lubitz, W.: Spectroscopic characterization of the key catalytic intermediate Ni-C in the O2-tolerant [NiFe] hydrogenase I from Aquifex aeolicus: evidence of a weakly bound hydride. Chemical Communications 48 (6), pp. 823 - 825 (2012)
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Pearson, J. W.; Stoll, M.; Wathen, A. J.: Regularization-Robust Preconditioners for Time-Dependent PDE-Constrained Optimization Problems. SIAM Journal on Matrix Analysis and Applications 33 (4), pp. 1126 - 1152 (2012)
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Popov, M.; Nacheva, G.; Reichl, U.; Ivanov, I.: Effect of the 3’-terminal truncation of the human interferon-gamma gene on plasmid segregation in escherichia coli. Biotechnology and Biotechnological Equipment 26 (2), pp. 2930 - 2936 (2012)
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Sommer, S.; Kienle, A.: Auto-Tuning of Multivariable PID Controllers Using Iterative Feedback Tuning. at - Automatisierungstechnik 60 (1), pp. 20 - 27 (2012)
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Stein, M.; Pilli, M.; Bernauer, S.; Habermann, B. H.; Zerial, M.; Wade, R. C.: The Interaction Properties of the Human Rab GTPase Family – A Comparative Analysis Reveals Determinants of Molecular Binding Selectivity. PLoS ONE 7 (4), p. e34870 (2012)
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Vidaković-Koch, T.; González Martinez, I.; Kuwertz, R.; Kunz, U.; Turek, T.; Sundmacher, K.: Electrochemical Membrane Reactors for Sustainable Chlorine Recycling. Membranes 2 (3), pp. 510 - 528 (2012)
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Yu, E.H.; Wang, Y.; Krewer, U.; Li, L.; Scott, K.: Direct oxidation alkaline fuel cells: from materials to systems. Energy & Environmental Science 5 (2), pp. 5668 - 5680 (2012)
2011
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Baur, U.; Beattie, C.; Benner, P.; Gugercin, S.: Interpolatory Projection Methods for Parameterized Model Reduction. SIAM Journal on Scientific Computing 33 (5), pp. 2489 - 2518 (2011)
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Benner, P.; Damm, T.: Lyapunov Equations, Energy Functionals, and Model Order Reduction of Bilinear and Stochastic Systems. SIAM Journal on Control and Optimization 49 (2), pp. 686 - 711 (2011)
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Chen, L.; Zhou, T.; Chen, L.; Ye, Y.; Qi, Z.; Freund, H.; Sundmacher, K.: Selective Oxidation of Cyclohexanol to Cyclohexanone in the Ionic Liquid 1-Octyl-3-Methylimidazolium Chloride. Chemical Communications 47 (33), pp. 9354 - 9356 (2011)
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Hädicke, O.; Grammel, H.; Klamt, S.: Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria. BMC Systems Biology 5, p. 150 (2011)
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Hamel, C.; Wolff, T.; Seidel-Morgenstern, A.: Compatibility of Transport and Reaction in Membrane Reactors Used for the Oxidative Dehydrogenation of Short-Chain Hydrocarbons. International Journal of Chemical Reactor Engineering 9, p. A12 (2011)
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Kolvenbach, B. A.; Lenz, M.; Benndorf, D.; Rapp, E.; Fousek, J.; Vlcek, C.; Schäffer, A.; Gabriel, F. L.; Kohler, H.-P. E.; Corvini, P. F.: Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3. AMB Express 1, p. 8 (2011)
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Lu, H.; Rihko-Struckmann, L.; Sundmacher, K.: Spontaneous oscillations of cell voltage, power density, and anode exit CO concentration in a PEM fuel cell. Physical Chemistry Chemical Physics 13 (40), pp. 18179 - 18185 (2011)
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Petiot, E.; Jacob, D.; Lanthier, S.; Lohr, V.; Ansorge, S.; Kamen, A. A.: Metabolic and Kinetic analyses of influenza production in perfusion HEK293 cell culture. BMC Biotechnology 11 (84), pp. 1 - 12 (2011)
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Popov, M.; Petrov, S. A.; Nacheva, G.; Ivanov, I.; Reichl, U.: Effects of a recombinant gene expression on ColE1-like plasmid segregation in Escherichia coli. BMC Biotechnology 11 (1), p. 18 (2011)
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Roedig, J.; Rapp, E.; Höper, D.; Genzel, Y.; Reichl, U.: Impact of Host Cell Line Adaptation on Quasispecies Composition and Glycosylation of Influenza A Virus Hemagglutinin. PLoS One 6 (12), p. e27989 (2011)
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Ryll, A.; Samaga, R.; Schaper, F.; Alexopoulos, L.G.; Klamt, S.: Large-scale models of IL-1 and IL-6 signaling and their hepatocellular specification. Molecular BioSystems 7 (12), pp. 3253 - 3270 (2011)
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Shalaby, R.; Schauer, T.; Liedecke, W.; Raisch, J.: Amplifier design for EMG recording from stimulation electrodes during functional electrical stimulation leg cycling ergometry. Biomedizinische Technik 56 (1), pp. 23 - 33 (2011)
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Zenith, F.; Krewer, U.: Simple and reliable model for estimation of methanol cross-over in direct methanol fuel cells and its application on methanol-concentration control. Energy & Environmental Science 4 (2), pp. 519 - 527 (2011)
2010
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Andres, C.; Meyer, S.; Dina, O. A.; Levine, J. D.; Hucho, T.: Quantitative automated microscopy (QuAM) elucidates growth factor specific signalling in pain sensitization. Molecular Pain 6, 98 (2010)
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Attia, S. A.; Azhmyakov, V.; Raisch, J.: On an Optimization Problem for a Class of Impulsive Hybrid Systems. Discrete Event Dynamic Systems: Theory and Applications 20 (2 ), pp. 215 - 231 (2010)
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Barrantes Bustinza, I. W.; Glockner, G.; Meyer, S.; Marwan, W.: Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum. BMC Genomics 11, 115 (2010)
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Cheviakov, A. F.; Ward, M. J.; Straube, R.: An Asymptotic Analysis of the Mean First Passage Time for Narrow Escape Problems: Part II: The Sphere. SIAM Multiscale Modeling and Simulation 8 (3), pp. 836 - 870 (2010)
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Franke, R.; Theis, F.J.; Klamt, S.: From Binary to Multivalued to Continuous Models: The Iac Operon as a Case Study. Journal of Integrative Bioinformatics 7 (1), p. 151 (2010)
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Hao Yu, E.; Krewer, U.; Scott, K.: Principles and Materials Aspects of Direct Alkaline Alcohol Fuel Cells. Energies 3 (8), pp. 1499 - 1528 (2010)
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Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.: Recent Advances in Enzymatic Fuel Cells: Experiments and Modeling. Energies 3 (4), pp. 803 - 846 (2010)
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Klamt, S.; Flassig, R.; Sundmacher, K.: TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics 26 (17), pp. 2160 - 2168 (2010)
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Ritter, J.; Wahl, A.; Freund, S.; Genzel, Y.; Reichl, U.: Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling. BMC Systems Biology 4, p. 61 (2010)
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Samaga, R.; von Kamp, A.; Klamt, S.: Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. Journal of Computational Biology 17 (1), pp. 39 - 53 (2010)
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Straube, R.; Nicola, E. M.: Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system. BMC Systems Biology 4, 165 (2010)
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Streif, S.; Oesterhelt, D.; Marwan, W.: A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis. BMC Systems Biology 4, 27 (2010)
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von Langermann, J.; Lorenz, H.; Böhm, O.; Flemming, A.; Bernsdorf, A.; Köckerling, M.; Schinzer, D.; Seidel-Morgenstern, A.: R*,S*-6,7-Dimethoxy-3-(4-methoxy-6-methyl-5,6,7,8-tetrahydro-[1,3]dioxolo[4,5-g]isoquinolin-5-yl)-3H-isobenzofuran-1-one (racemic alpha-Noscapine). Acta Crystallographica Section E: Structure Reports Online 66, p. o570 (2010)
2009
Journal Article
Coombs, D.; Straube, R.; Ward, M. J.: Diffusion on a Sphere with Localized Traps: Mean First Passage Time, Eigenvalue Asymptotics, and Fekete Points. SIAM Journal on Applied Mathematics 70 (1), pp. 302 - 332 (2009)
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Gogolenko, S.Y.; Svjatnyi, V.: Architecture aware parallelization of solvers for PDE systems on geometrical graphs. Computer science - Research and Development 23 (3-4), pp. 225 - 230 (2009)
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Grötsch, M.; Mangold, M.; Kienle, A.: Analysis of the Coupling Behavior of PEM Fuel Cells and DC-DC Converters. Energies 2 (1), pp. 71 - 96 (2009)
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Hussain, A.; Seidel-Morgenstern, A.; Tsotsas, E.: Effect of top layer's material and flow direction on mass transfer through multi-layer ceramic membranes. Canadian Journal of Pure & Applied Sciences 3 (3), pp. 993 - 1000 (2009)
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Hussain, A.; Seidel-Morgenstern, A.; Tsotsas, E.: Influence of volumetric flow rate and temperature on mass transfer in composite ceramic membranes for membrane reactors. Canadian Journal of Pure and Applied Sciences 3 (1), pp. 741 - 749 (2009)
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Ivanov, I.; Vidaković-Koch, T.; Sundmacher, K.: Glucose electrooxidation for biofuel cell applications. Chemical and Biochemical Engineering Quarterly 23 (1), pp. 77 - 86 (2009)
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Klamt, S.; Haus, U.-U.; Theis, F.: Hypergraphs and cellular networks. PLoS Computational Biology 5 (5), p. e1000385 (2009)
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Klamt, S.; von Kamp, A.: Computing Paths and Cycles in Biological Interaction Graphs. BMC Bioinformatics 10, p. 181 (2009)
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Mirschel, S.; Steinmetz, K.; Rempel, M.; Ginkel, M.; Gilles, E. D.: ProMoT: Modular Modeling for Systems Biology. Bioinformatics 25 (5), pp. 687 - 689 (2009)
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Poltz, R.; Franke, R.; Schweitzer, K.; Klamt, S.; Gilles, E. D.; Naumann, M.: Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry 2, pp. 125 - 138 (2009)
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Saez-Rodriguez, J.; Alexopoulos, L. G.; Epperlein, J.; Samaga, R.; Lauffenburger, D. A.; Klamt, S.; Sorger, P. K.: Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Molecular Systems Biology 5, p. 331 (2009)
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Samaga, R.; Saez-Rodriguez, J.; Alexopoulos, L. G.; Sorger, P. K.; Klamt, S.: The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Computational Biology 5 (8), e1000438 (2009)
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