Publications of Systems Biology (SBI)

Journal Article (9)

2003
Journal Article
Ederer, M.; Sauter, T.; Bullinger, E.; Gilles, E. D.; Allgöwer, F.: An approach for dividing models of biological reaction networks into functional units. Simulation: Transactions of the Society for Modeling and Simulation 79 (12), pp. 703 - 716 (2003)
Journal Article
Ginkel, M.; Kremling, A.; Nutsch, T.; Rehner, R.; Gilles, E. D.: Modular modeling of cellular systems with ProMoT/Diva. Bioinformatics 19, pp. 1169 - 1176 (2003)
Journal Article
Grammel, H.; Gilles, E. D.; Ghosh, R.: Microaerophilic cooperation of reductive and oxidative pathways allows maximal photosynthetic membrane biosynthesis in Rhodospirillum rubrum. Applied and Environmental Microbiology 69 (11), pp. 6577 - 6586 (2003)
Journal Article
Grüner, S.; Mohl, K. D.; Kienle, A.; Gilles, E. D.; Fernholz, G.; Friedrich, M.: Nonlinear control of a reactive distillation column. Control Engineering Practice 11 (8), pp. 915 - 925 (2003)
Journal Article
Hucka, M.; Finney, A.; Sauro, H. M.; Bolouri, H.; Doyle, J. C.; Kitano, H.; Arkin, A. P.; Bornstein, B. J.; Bray, D.; Cornish-Bowden, A. et al.; Cuellar, A. A.; Dronov, S.; Gilles, E. D.; Ginkel, M.; Gor, V.; Goryanin, I. I.; Hedley, W. J.; Hodgman, T. C.; Hofmeyr, J. H.; Hunter, P. J.; Juty, N. S.; Kasberger, J. L.; Kremling, A.; Kummer, U.; Le Novere, N.; Loew, L. M.; Lucio, D.; Mendes, P.; Minch, E.; Mjolsness, E. D.; Nakayama, Y.; Nelson, M. R.; Nielsen, P. F.; Sakurada, T.; Schaff, J. C.; Shapiro, B. E.; Shimizu, T. S.; Spence, H. D.; Stelling, J.; Takahashi, K.; Tomita, M.; Wagner, J.; Wang, J.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19 (4), pp. 524 - 531 (2003)
Journal Article
Klamt, S.; Stelling, J.: Two approaches for metabolic pathway analysis? Trends in Biotechnology 21 (2), pp. 64 - 69 (2003)
Journal Article
Klamt, S.; Stelling, J.; Ginkel, M.; Gilles, E. D.: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 19 (2), pp. 261 - 269 (2003)
Journal Article
Motz, S.; Mitrovic, A.; Gilles, E. D.; Vollmer, U.; Raisch, J.: Modeling, simulation and stabilizing H-control of an oscillating continuous crystallizer with fines dissolution. Chemical Engineering Science 58 (15), pp. 3473 - 3488 (2003)
Journal Article
Nutsch, T.; Marwan, W.; Oesterhelt, D.; Gilles, E. D.: Signal processing and flagellar motor switching during phototaxis of Halobacterium salinarum. Genome Research 13 (11), pp. 2406 - 2412 (2003)

Conference Paper (6)

2003
Conference Paper
Chebotarov, M.; Ginkel, M.; Häfele, M.; Mangold, M.; Gilles, E. D.; Kienle, A.; Svjatnyj, V.: DIVAGUI: the graphical user interface for the simulation environment DIVA. In: Simulationstechnik: 17. Symposium in Magdeburg, pp. 155 - 160 (Ed. Hohmann, R.). ASIM 2003 : 17. Symposium Simulationstechnik, Magdeburg, Germany, May 16, 2003 - May 19, 2003. (2003)
Conference Paper
Kremling, A.; Bettenbrock, K.; Fischer, S.; Ginkel, M.; Sauter, T.; Gilles, E. D.: Towards whole cell in silico models for cellular systems: model set-up and model validation. In: Positive systems: proceedings of the First Multidisciplinary International Symposium on Positive Systems (POST 2003), pp. 92 - 102 (Eds. Benvenuti, L.; de Santis, A.; Farina, L.). First Multidisciplinary International Symposium on Positive Systems (POST 2003), Rome, Italy, August 28, 2003 - August 30, 2003. (2003)
Conference Paper
Mangold, M.; Ginkel, M.; Gilles, E. D.: Entwicklung einer Bibliothek dynamischer Membranreaktormodelle mit Hilfe des Modellierungswerkzeugs ProMoT. In: Simulationstechnik: 17. Symposium in Magdeburg, pp. 161 - 166 (Ed. Hohmann, R.). ASIM 2003 - 17. Symposium Simulationstechnik, Magdeburg, Germany, September 16, 2003 - September 19, 2003. (2003)
Conference Paper
Mangold, M.; Ginkel, M.; Gilles, E. D.: A dynamic model library for membrane reactors. In: ECCE - 4th European Congress of Chemical Engineering, p. P-6.1-033. ECCE - 4th European Congress of Chemical Engineering, Granada, Spain, September 21, 2003 - September 25, 2003. (2003)
Conference Paper
Waschler, R.; Angeles-Palacios, O.; Ginkel, M.; Kienle, A.: Flexible Modellierung grosschemischer Anlagen mit dem Modellierungswerkzeug ProMoT. In: Simulationstechnik: 17. Symposium in Magdeburg, pp. 173 - 178 (Ed. Hohmann, R.). 17. Symposium Simulationstechnik : ASIM 2003, Magdeburg, Germany, May 16, 2003 - May 19, 2003. (2003)
Conference Paper
Waschler, R.; Angeles-Palacios, O.; Ginkel, M.; Kienle, A.: Application of the Process Modeling Tool ProMoT to large-scale chemical engineering processes. In: Proceedings / 4rd MATHMOD, pp. 1113 - 1121. 4th IMACS Symposium on Mathematical Modelling, Vienna, Austria, February 05, 2003 - February 07, 2003. (2003)

Meeting Abstract (1)

2003
Meeting Abstract
Zeyer, K. P.; Mangold, M.; Gilles, E. D.: Bifurcation Analysis and Safety Aspects in a Nonlinear Exothermic Reaction. In ACHEMA 2003: 27th International Exhibition-Congress on Chemical Engineering, Environmental Protection and Biotechnology, p. 107. ACHEMA 2003 : 27th International Exhibition-Congress on Chemical Engineering, Environmental Protection and Biotechnology, Frankfurt am Main, Germany, May 19, 2003 - May 24, 2003. (2003)

Thesis - PhD (2)

2003
Thesis - PhD
Sauter, T.: Die bakterielle Signalverarbeitung am Beispiel des Sucrose Phosphotransferasesystems in Escherichia coli: Modellierung und experimentelle Überprüfung. Dissertation, Universität, Stuttgart (2003)
Thesis - PhD
Schoeberl, B.: Mathematical modeling of signal transduction pathways in mammalian cells at the example of the EGF induced MAP kinase cascade and TNF receptor crosstalk. Dissertation, Shaker, Aachen (2003)
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