Journal Article (111)
100.
Journal Article
5, 175 (2004)
Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 101.
Journal Article
20, pp. 226 - 234 (2004)
Minimal cut sets in biochemical reaction networks. Bioinformatics 102.
Journal Article
46, pp. 12 - 19 (2004)
Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology 103.
Journal Article
22 (8), pp. 400 - 405 (2004)
Comparison of network-based pathway analysis methods. Trends in Biotechnology 104.
Journal Article
21 (2), pp. 64 - 69 (2003)
Two approaches for metabolic pathway analysis? Trends in Biotechnology 105.
Journal Article
19 (2), pp. 261 - 269 (2003)
FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 106.
Journal Article
29 (1-2), pp. 243 - 248 (2002)
Calculating as many fluxes as possible in underdetermined metabolic networks. Molecular Biology Reports 107.
Journal Article
77 (7), pp. 734 - 751 (2002)
Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnology and Bioengineering 108.
Journal Article
29 (1-2), pp. 233 - 236 (2002)
Combinatorial complexity of pathway analysis in metabolic networks. Molecular Biology Reports 109.
Journal Article
20 (8), p. 322 (2002)
Applying metabolic pathway analysis to make good use of methanol. Trends in Biotechnology 110.
Journal Article
24 (6), pp. 363 - 372 (2002)
Use of network analysis of metabolic systems in bioengineering. Bioprocess and Biosystems Engineering 111.
Journal Article
420 (6912), pp. 190 - 193 (2002)
Metabolic network structure determines key aspects of functionality and regulation. Nature Book Chapter (3)
112.
Book Chapter
Stoichiometric and Constraint-Based Analysis of Biochemical Reaction Networks. In: Large-Scale Networks in Engineering and Life Sciences, pp. 263 - 316. Springer International Publishing, Cham (2014)
113.
Book Chapter
Benchmarking a Simple Yet Effective Approach for Inferring Gene Regulatory Networks from Systems Genetic Data. In: Gene Network Inference: Verification of Methods for Systems Genetic Data., pp. 33 - 47. Springer, Heidelberg (2013)
114.
Book Chapter
Host-pathogen interactions. In: Systems Biology of Tuberculosis, pp. 107 - 126. Springer, New York (2013)
Conference Paper (10)
115.
Conference Paper
Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. In: 33rd European Symposium on Computer Aided Chemical Engineering, pp. 2601 - 2606 (Eds. Kokossis, A.; Georgiadis, M. C.; Pistikopoulos, E.). 33rd European Symposium on Computer Aided Process Engineering, Athen, Greece, June 18, 2023 - June 21, 2023. Elsevier, Amsterdam, Netherlands (2023)
116.
Conference Paper
Batch-to-Batch Optimization with Model Adaptation Leveraging Gaussian Processes: The Case of Optogenetically Assisted Microbial Consortia. In: International Conference on Control, Automation and Systems, pp. 1292 - 1297. 23rd International Conference on Control, Automation and Systems, ICCAS 2023, Yeosu, Korea, October 17, 2023 - October 20, 2023. (2023)
117.
Conference Paper
56 (2), pp. 4608 - 4613 (2023)
Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC-PapersOnLine 118.
Conference Paper
55 (23), pp. 92 - 97 (2022)
Cell-free biosynthesis meets dynamic optimization and control: a fed-batch framework. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine 119.
Conference Paper
55, pp. 174 - 180. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea, June 14, 2022 - June 17, 2022. (2022)
Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. In: IFAC-PapersOnLine, Vol. 120.
Conference Paper
55 (23), pp. 109 - 114 (2022)
Using parameter sampling to explore key properties of E. coli's anaerobic metabolism. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine 121.
Conference Paper
Systembiologische Untersuchung bakterieller Stoffwechselnetzwerke und Enzyme für die technische Verwertung von CO. In: Technische Systeme für die Lebenswissenschaften, pp. 115 - 122. 18. Heiligenstädter Kolloquium, Heiligenstadt, September 19, 2016 - September 21, 2016. (2016)
122.
Conference Paper
A fusion approach linking signaling logic and metabolic mass-flow kinetics in hepatocytes. In: Computational Methods in Systems Biology: 11th International Conference, CMSB 2013, pp. 255 - 256. 11th International Conference on Computational Methods in Systems Biology CMSB 13, Klosterneuburg, Austria, September 22, 2013 - September 24, 2013. (2013)
123.
Conference Paper
CASOP GS: Computing intervention strategies targeted at production improvement in genome-scale metabolic networks. In: German Conference on Bioinformatics 2010, pp. 71 - 80 (Eds. Schomburg, D.; Grote, A.). German Conference on Bioinformatics 2010, Braunschweig, Germany, September 20, 2010 - September 22, 2010. (2010)
124.
Conference Paper
FluxAnalyzer: a graphical user interface for stoichiometric and quantitative analysis of metabolic networks. 8th IFAC Internationall Conference on Computer Applications in Biotechnology, Québec, June 24, 2001 - June 27, 2001. IFAC Proceedings Volumes, pp. 119 - 124 (2001)
Talk (10)
125.
Talk
Development of a cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimization. GlycoBioTec Symposium 2023, Berlin, Germany (2023)
126.
Talk
A cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimization. 3rd Japan-Switzerland-Germany Workshop on Biocatalysis and Bioprocess Development
, Aichi (Japan) (2023)
127.
Talk
Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. 33rd European Symposium on Computer-Aided Process Engineering (ESCAPE-33), Athens, Greece (2023)
128.
Talk
Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC World Congress 2023, Yokohama, Japan (2023)
129.
Talk
Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea (2022)
130.
Talk
Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-Fucose. ISGSB2022 Conference, Innsbruck, Austria (2022)
131.
Talk
Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Himmelfahrtstagung "Models for Developing and Optimising Biotech Production", Neu-Ulm, Germany (2017)
132.
Talk
Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Systems Biology meets Synthetic Biology, Frankfurt am Main, Germany (2017)
133.
Talk
Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), Jena, Germany (2016)
134.
Talk
Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), Jena, Germany (2016)
Poster (9)
135.
Poster
A toolbox for designing optimal multi-stage processes. Metabolic Pathway Analysis, Seoul, Korea (2023)
136.
Poster
Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-Fucose. ISGSB2022 Conference, Innsbruck, Austria (2022)
137.
Poster
Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-Fucose. Metabolic Pathway Analysis, Seoul, Korea (2022)
138.
Poster
Strategies for Modeling of Large-Scale Metabolic Models of Microbial Communities. Metabolic Pathway Analysis 2017, Bozeman, Montana, USA (2017)
139.
Poster
Model-Based Metabolic Engineering of Escherichia coli for High Yield Itaconic Acid Production. Metabolic Engineering 11, Kobe, Japan (2016)
140.
Poster
Model-Based Metabolic Engineering of Escherichia Coli for High Yield Itaconic Acid Production. 6th International Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany (2016)
141.
Poster
New Methods for Modeling of Microbial Communities with Stoichiometric Metabolic Models. 6th International Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany (2016)
142.
Poster
Prediction of Community Compositions in Stoichiometric Community Models. 4th Conference on Constraint-Based Reconstruction and Analysis, Heidelberg, Germany (2015)
143.
Poster
An effective Framework for Gene RegulatoryNetwork Reconstruction from Genetical Genomics Data. GCB 2012, Jena, Germany (2012)
Thesis - PhD (1)
144.
Thesis - PhD
Strukturelle Analyse von Stoffwechselnetzen illustriert am bakteriellen Redox- und Zentralstoffwechsel. Dissertation, Shaker, Aachen (2005)
Issue (1)
145.
Issue
105, (2 ) (2011)
Proceedings of the workshop "Integration of OMICs datasets into metabolic pathway analysis" Edingburgh, U.K., 15 October 2010 IOMPA 2010 (Special issue). Biosystems Editorial (1)
146.
Editorial
105 (2), pp. 107 - 108 (2011)
Special Issue: Integration of OMICs datasets into Metabolic Pathway Analysis. Biosystems