Journal Article (111)

100.
Journal Article
Gagneur, J.; Klamt, S.: Computation of elementary modes: a unifying framework and the new binary approach. BMC Bioinformatics 5, 175 (2004)
101.
Journal Article
Klamt, S.; Gilles, E. D.: Minimal cut sets in biochemical reaction networks. Bioinformatics 20, pp. 226 - 234 (2004)
102.
Journal Article
Kremling, A.; Ginkel, M.; Klamt, S.; Gilles, E. D.: Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme. it - Information Technology 46, pp. 12 - 19 (2004)
103.
Journal Article
Papin, J. A.; Stelling, J.; Price, N. D.; Klamt, S.; Schuster, S.; Palsson, B. O.: Comparison of network-based pathway analysis methods. Trends in Biotechnology 22 (8), pp. 400 - 405 (2004)
104.
Journal Article
Klamt, S.; Stelling, J.: Two approaches for metabolic pathway analysis? Trends in Biotechnology 21 (2), pp. 64 - 69 (2003)
105.
Journal Article
Klamt, S.; Stelling, J.; Ginkel, M.; Gilles, E. D.: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 19 (2), pp. 261 - 269 (2003)
106.
Journal Article
Klamt, S.; Schuster, S.: Calculating as many fluxes as possible in underdetermined metabolic networks. Molecular Biology Reports 29 (1-2), pp. 243 - 248 (2002)
107.
Journal Article
Klamt, S.; Schuster, S.; Gilles, E. D.: Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnology and Bioengineering 77 (7), pp. 734 - 751 (2002)
108.
Journal Article
Klamt, S.; Stelling, J.: Combinatorial complexity of pathway analysis in metabolic networks. Molecular Biology Reports 29 (1-2), pp. 233 - 236 (2002)
109.
Journal Article
Schuster, S.; Klamt, S.: Applying metabolic pathway analysis to make good use of methanol. Trends in Biotechnology 20 (8), p. 322 (2002)
110.
Journal Article
Schuster, S.; Klamt, S.; Weckwerth, W.; Moldenhauer, F.; Pfeiffer, T.: Use of network analysis of metabolic systems in bioengineering. Bioprocess and Biosystems Engineering 24 (6), pp. 363 - 372 (2002)
111.
Journal Article
Stelling, J.; Klamt, S.; Bettenbrock, K.; Schuster, S.; Gilles, E. D.: Metabolic network structure determines key aspects of functionality and regulation. Nature 420 (6912), pp. 190 - 193 (2002)

Book Chapter (3)

112.
Book Chapter
Klamt, S.; Haedicke, O.; von Kamp, A.: Stoichiometric and Constraint-Based Analysis of Biochemical Reaction Networks. In: Large-Scale Networks in Engineering and Life Sciences, pp. 263 - 316. Springer International Publishing, Cham (2014)
113.
Book Chapter
Heise, S.; Flassig, R.; Klamt, S.: Benchmarking a Simple Yet Effective Approach for Inferring Gene Regulatory Networks from Systems Genetic Data. In: Gene Network Inference: Verification of Methods for Systems Genetic Data., pp. 33 - 47. Springer, Heidelberg (2013)
114.
Book Chapter
Waddell, S. J.; Kamp von, A.; Klamt, S.; Neyrolles, O.: Host-pathogen interactions. In: Systems Biology of Tuberculosis, pp. 107 - 126. Springer, New York (2013)

Conference Paper (10)

115.
Conference Paper
Espinel-Rios, S.; Bettenbrock, K.; Klamt, S.; Avalos, J. L.; Findeisen, R.: Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. In: 33rd European Symposium on Computer Aided Chemical Engineering, pp. 2601 - 2606 (Eds. Kokossis, A.; Georgiadis, M. C.; Pistikopoulos, E.). 33rd European Symposium on Computer Aided Process Engineering, Athen, Greece, June 18, 2023 - June 21, 2023. Elsevier, Amsterdam, Netherlands (2023)
116.
Conference Paper
Espinel-Rios, S.; Kok, R.; Klamt, S.; Avalos, J. L.; Findeisen, R.: Batch-to-Batch Optimization with Model Adaptation Leveraging Gaussian Processes: The Case of Optogenetically Assisted Microbial Consortia. In: International Conference on Control, Automation and Systems, pp. 1292 - 1297. 23rd International Conference on Control, Automation and Systems, ICCAS 2023, Yeosu, Korea, October 17, 2023 - October 20, 2023. (2023)
117.
Conference Paper
Espinel-Rios, S.; Slaviero, G.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC-PapersOnLine 56 (2), pp. 4608 - 4613 (2023)
118.
Conference Paper
Espinel-Rios, S.; Huber, N.; Alcalá Orozco, E. A.; Morabito, B.; Rexer, T.; Reichl, U.; Klamt, S.; Findeisen, R.: Cell-free biosynthesis meets dynamic optimization and control: a fed-batch framework. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine 55 (23), pp. 92 - 97 (2022)
119.
Conference Paper
Espinel-Rios, S.; Morabito , B.; Pohlodek, J.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. In: IFAC-PapersOnLine, Vol. 55, pp. 174 - 180. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea, June 14, 2022 - June 17, 2022. (2022)
120.
Conference Paper
Slaviero, G.; Steuer, R.; Klamt, S.: Using parameter sampling to explore key properties of E. coli's anaerobic metabolism. 9th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE), Cambridge, MA, August 28, 2022 - August 31, 2022. IFAC-PapersOnLine 55 (23), pp. 109 - 114 (2022)
121.
Conference Paper
Hädicke, O.; Pozzi, R.; Witt, A.; Oldiges, M.; Klamt, S.; Grammel, H.: Systembiologische Untersuchung bakterieller Stoffwechselnetzwerke und Enzyme für die technische Verwertung von CO. In: Technische Systeme für die Lebenswissenschaften, pp. 115 - 122. 18. Heiligenstädter Kolloquium, Heiligenstadt, September 19, 2016 - September 21, 2016. (2016)
122.
Conference Paper
Ryll, A.; Bucher, J.; Niklas , J.; Klamt, S.: A fusion approach linking signaling logic and metabolic mass-flow kinetics in hepatocytes. In: Computational Methods in Systems Biology: 11th International Conference, CMSB 2013, pp. 255 - 256. 11th International Conference on Computational Methods in Systems Biology CMSB 13, Klosterneuburg, Austria, September 22, 2013 - September 24, 2013. (2013)
123.
Conference Paper
Bohl, K.; Figueiredo, L.F.; Hädicke, O.; Klamt, S.; Kost, C.; Schuster, S.; Kaleta, C.: CASOP GS: Computing intervention strategies targeted at production improvement in genome-scale metabolic networks. In: German Conference on Bioinformatics 2010, pp. 71 - 80 (Eds. Schomburg, D.; Grote, A.). German Conference on Bioinformatics 2010, Braunschweig, Germany, September 20, 2010 - September 22, 2010. (2010)
124.
Conference Paper
Klamt, S.; Kremling, A.; Gilles, E. D.: FluxAnalyzer: a graphical user interface for stoichiometric and quantitative analysis of metabolic networks. 8th IFAC Internationall Conference on Computer Applications in Biotechnology, Québec, June 24, 2001 - June 27, 2001. IFAC Proceedings Volumes, pp. 119 - 124 (2001)

Talk (10)

125.
Talk
Alcalá Orozco, E. A.; Huber, N.; Klamt, S.; Rexer, T.; Reichl, U.: Development of a cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimization. GlycoBioTec Symposium 2023, Berlin, Germany (2023)
126.
Talk
Alcalá Orozco, E. A.; Huber, N.; Klamt, S.; Rexer, T.; Reichl, U.: A cell-free enzymatic cascade for the synthesis of GDP-fucose - modeling and optimization. 3rd Japan-Switzerland-Germany Workshop on Biocatalysis and Bioprocess Development , Aichi (Japan) (2023)
127.
Talk
Espinel-Rios, S.; Bettenbrock, K.; Klamt, S.; Avalos, J.; Findeisen, R.: Machine learning-supported cybergenetic modeling, optimization and control for synthetic microbial communities. 33rd European Symposium on Computer-Aided Process Engineering (ESCAPE-33), Athens, Greece (2023)
128.
Talk
Espinel-Rios, S.; Slaviero, G.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Monitoring intracellular metabolite concentrations by moving horizon estimation based on kinetic modeling. IFAC World Congress 2023, Yokohama, Japan (2023)
129.
Talk
Espinel-Rios, S.; Morabito , B.; Pohlodek, J.; Bettenbrock, K.; Klamt, S.; Findeisen, R.: Optimal control and dynamic modulation of the ATPase gene expression for enforced ATP wasting in batch fermentations. 13th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, DYCOPS 2022, Busan, Korea (2022)
130.
Talk
Huber, N.; Alcalá Orozco, E. A.; Rexer, T.; Reichl, U.; Klamt, S.: Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-Fucose. ISGSB2022 Conference, Innsbruck, Austria (2022)
131.
Talk
Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Himmelfahrtstagung "Models for Developing and Optimising Biotech Production", Neu-Ulm, Germany (2017)
132.
Talk
Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Systems Biology meets Synthetic Biology, Frankfurt am Main, Germany (2017)
133.
Talk
Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Model-based Metabolic Engineering of Escherichia coli for high yield itaconic acid production. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), Jena, Germany (2016)
134.
Talk
Koch, S.; Benndorf, D.; Reichl, U.; Klamt, S.: Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Annual Conference 2016 of the Association for General and Applied Microbiology (VAAM), Jena, Germany (2016)

Poster (9)

135.
Poster
Bauer, J.; Boecker, S.; Klamt, S.: A toolbox for designing optimal multi-stage processes. Metabolic Pathway Analysis, Seoul, Korea (2023)
136.
Poster
Huber, N.; Alcalá Orozco, E. A.; Rexer, T.; Reichl, U.; Klamt, S.: Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-Fucose. ISGSB2022 Conference, Innsbruck, Austria (2022)
137.
Poster
Huber, N.; Alcalá Orozco, E. A.; Rexer, T.; Reichl, U.; Klamt, S.: Dynamic Modeling and Optimization of a Cell-free Enzymatic Cascade for the Production of GDP-Fucose. Metabolic Pathway Analysis, Seoul, Korea (2022)
138.
Poster
Koch, S.; Benndorf, D.; Kohrs, F.; Lahmann, P.; Reichl, U.; Klamt, S.: Strategies for Modeling of Large-Scale Metabolic Models of Microbial Communities. Metabolic Pathway Analysis 2017, Bozeman, Montana, USA (2017)
139.
Poster
Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Model-Based Metabolic Engineering of Escherichia coli for High Yield Itaconic Acid Production. Metabolic Engineering 11, Kobe, Japan (2016)
140.
Poster
Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Model-Based Metabolic Engineering of Escherichia Coli for High Yield Itaconic Acid Production. 6th International Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany (2016)
141.
Poster
Koch, S.; Benndorf, D.; Reichl, U.; Klamt, S.: New Methods for Modeling of Microbial Communities with Stoichiometric Metabolic Models. 6th International Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany (2016)
142.
Poster
Koch, S.; Benndorf, D.; Reichl, U.; Klamt, S.: Prediction of Community Compositions in Stoichiometric Community Models. 4th Conference on Constraint-Based Reconstruction and Analysis, Heidelberg, Germany (2015)
143.
Poster
Flassig, R.; Heise, S.; Sundmacher, K.; Klamt, S.: An effective Framework for Gene RegulatoryNetwork Reconstruction from Genetical Genomics Data. GCB 2012, Jena, Germany (2012)

Thesis - PhD (1)

144.
Thesis - PhD
Klamt, S.: Strukturelle Analyse von Stoffwechselnetzen illustriert am bakteriellen Redox- und Zentralstoffwechsel. Dissertation, Shaker, Aachen (2005)

Issue (1)

145.
Issue
Schuster, S.; Kaleta, C.; Klamt, S.; Figueiredo de, L.F. (Eds.): Proceedings of the workshop "Integration of OMICs datasets into metabolic pathway analysis" Edingburgh, U.K., 15 October 2010 IOMPA 2010 (Special issue). Biosystems 105, (2 ) (2011)

Editorial (1)

146.
Editorial
Kaleta, C.; de Figueiredo, L. F.; Heiland, I.; Klamt, S.; Schuster, S.: Special Issue: Integration of OMICs datasets into Metabolic Pathway Analysis. Biosystems 105 (2), pp. 107 - 108 (2011)
Go to Editor View