Publications

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Journal Article (181)

  1. 2012
    Huard, J.; Mueller, S.; Gilles, E. D.; Klingmüller, U.; Klamt, S.: An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytes. FEBS Journal 279 (18), pp. 3290 - 3313 (2012)
  2. 2011
    Ederer, M.; Gilles, E. D.; Sawodny, O.: The Glansdorff-Prigogine stability criterion for biochemical reaction networks. Automatica 47 (6), pp. 1097 - 1104 (2011)
  3. 2009
    Mirschel, S.; Steinmetz, K.; Rempel, M.; Ginkel, M.; Gilles, E. D.: ProMoT: Modular Modeling for Systems Biology. Bioinformatics 25 (5), pp. 687 - 689 (2009)
  4. Poltz, R.; Franke, R.; Schweitzer, K.; Klamt, S.; Gilles, E. D.; Naumann, M.: Logical network of genotoxic stress-induced NF-kB signal transduction predicts putative target structures for therapeutic intervention strategies. Advances and Applications in Bioinformatics and Chemistry 2, pp. 125 - 138 (2009)
  5. Schlatter, R.; Conzelmann, H.; Gilles, E. D.; Sawodny, O.; Sauter, T.: Analysis of an apoptotic core model focused on experimental design using artificial data. IET Systems Biology 3 (4), pp. 255 - 265 (2009)
  6. 2008
    Conzelmann, H.; Fey, D.; Gilles, E. D.: Exact model reduction of combinatorial reaction networks. BMC Systems Biology 2, p. 78 (2008)
  7. Ederer, M.; Gilles, E. D.: Thermodynamic Constraints in Kinetic Modeling: Thermodynamic-Kinetic Modeling in Comparison to Other Approaches. Engineering in Life Sciences 8 (5), pp. 467 - 476 (2008)
  8. Feuer, R.; Ederer, M.; Gilles, E. D.; Sprenger, G. A.; Sawodny, O.; Sauter, T.: Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante. at - Automatisierungstechnik 56 (5), pp. 257 - 268 (2008)
  9. Franke, R.; Mueller, M.; Wundrack, N.; Gilles, E. D.; Klamt, S.; Kaehne, T.; Naumann, M.: Host-pathogen systems biology: Logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction. BMC Systems Biology 2, 4 (2008)
  10. Klamt, S.; Grammel, H.; Straube, R.; Ghosh, R.; Gilles, E. D.: Modeling the electron transport chain of purple non-sulfur bacteria. Molecular Systems Biology 4, 156 (2008)
  11. Koschorreck, M.; Gilles, E. D.: Mathematical modeling and analysis of insulin clearance in vivo. BMC Systems Biology 2, p. 43 (2008)
  12. Koschorreck, M.; Gilles, E. D.: ALC: automated reduction of rule-based models. BMC Systems Biology 2, 91 (2008)
  13. Kremling, A.; Bettenbrock, K.; Gilles, E. D.: A feed-forward loop guarantees robust behavior in Echerichia coli carbohydrate uptake. Bioinformatics 24, pp. 704 - 710 (2008)
  14. Motz, S.; Mannal, S.; Gilles, E. D.: State estimation in batch crystallization using reduced population models. Journal of Process Control 18 (3-4), pp. 361 - 374 (2008)
  15. Saez-Rodriguez, J.; Gayer, S.; Ginkel, M.; Gilles, E. D.: Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. Bioinformatics 24 (16), pp. i213 - i219 (2008)
  16. Saez-Rodriguez, J.; Hammerle-Fickinger, A.; Dalal, O.; Klamt, S.; Gilles, E. D.; Conradi, C.: Multistability of signal transduction motifs. IET Systems Biology 2 (2), pp. 80 - 93 (2008)
  17. Wang, X. Q.; Simeoni, L.; Lindquist, J. A.; Saez-Rodriguez, J.; Ambach, A.; Gilles, E. D.; Kliche, S.; Schraven, B.: Dynamics of proximal signaling events after TCR/CD8-mediated induction of proliferation or apoptosis in mature CD8+ T cells. Journal of Immunology 180 (10), pp. 6703 - 6712 (2008)
  18. 2007
    Bettenbrock, K.; Sauter, T.; Jahreis, K.; Kremling, A.; Lengeler, J. W.; Gilles, E. D.: Correlation between growth rates, EIIACrr phosphorylation, and intracellular cAMP levels in Escherichia coli K-12. Journal of Bacteriology 189 (19), pp. 6891 - 6900 (2007)
  19. Ederer, M.; Gilles, E. D.: Thermodynamically feasible kinetic models of reaction networks. Biophysical Journal 92 (6), pp. 1846 - 1857 (2007)
  20. Klamt, S.; Saez-Rodriguez, J.; Gilles, E. D.: Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biology 1, 2 (2007)
 
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