Publications IMPRS

Benner, P.; Dolgov, S.; Onwunta, A.; Stoll, M.: Low-Rank Solvers for Unsteady Stokes-Brinkman Optimal Control Problem with Random Data. Computer Methods in Applied Mechanics and Engineering 304, pp. 26 - 54 (2016)

Benner, P.; Goyal, P. K.: Multipoint Interpolation of Volterra Series and H₂-Model Reduction for a Family of Bilinear Descriptor Systems. Systems & Control Letters 97, pp. 1 - 11 (2016)

Benner, P.; Onwunta, A.; Stoll, M.: Block-diagonal Preconditioning for Optimal Control Problems Constrained by PDEs with Uncertain Inputs. SIAM Journal on Matrix Analysis and Applications 37 (2), pp. 491 - 518 (2016)

Benner, P.; Saak, J.; Uddin, M. M.: Balancing Based Model Reduction for Structured Index-2 Unstable Descriptor Systems with Application to Flow Control. Numerical Algebra, Control and Optimization 6 (1), pp. 1 - 20 (2016)

Benner, P.; Saak, J.; Uddin, M. M.: Structure Preserving Model Order Reduction of Large Sparse Second-Order Index-1 Systems and Application to a Mechatronics Model. Mathematical and Computer Modelling of Dynamical Systems 22 (6), pp. 509 - 523 (2016)

Börsch, A.; Schaber, J.: The role of time delay in adaptive cellular negative feedback systems. Journal of Theoretical Biology 398, pp. 64 - 73 (2016)

Bück, A.; Dürr, R.; Schmidt, M.; Tsotsas, E.: Model predictive control of continuous layering granulation in fluidised beds with internal product classification. Journal of Process Control 45, pp. 65 - 75 (2016)

Dunker, .; Roloff, C.; Grassmann , A.: Interferometric laser imaging for in-flight cloud droplet sizing. Measurement Science and Technology 27 (12), 124004 (2016)

Eshghinejadfard, A.; Abdelsamie, A.; Janiga, G.; Thévenin, D.: Direct-forcing immersed boundary lattice Boltzmann simulation of particle/fluid interactions for spherical and non-spherical particles. Particuology 25, pp. 93 - 103 (2016)

Eshghinejadfard, A.; Daróczy, L.; Janiga, G.; Thévenin, D.: Calculation of the permeability in porous media using the lattice Boltzmann method. International Journal of Heat and Fluid Flow 62, Part A, pp. 93 - 103 (2016)

Eshghinejadfard, A.; Thévenin, D.: Numerical simulation of heat transfer in particulate flows using a thermal immersed boundary lattice Boltzmann method. International Journal of Heat and Fluid Flow 60, pp. 31 - 46 (2016)

Harder, B.-J.; Bettenbrock, K.; Klamt, S.: Model-Based metabolic engineering enables high yield itaconic acid production by Escherichia coli. Metabolic Engineering 38, pp. 29 - 37 (2016)

Kienle, A.; Palis, S.; Mangold, M.; Dürr, R.: Modeling and simulation of particulate processes. Electronic Modeling 38 (5), pp. 23 - 33 (2016)

Koch, S.; Benndorf, D.; Fronk, K.; Reichl, U.; Klamt, S.: Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process. Biotechnology for Biofuels 9, 17 (2016)

Kollarovic , G.; Studencka , M.; Ivanova , L.; Lauenstein , C.; Heinze , K.; Lapytsko, A.; Rastgou Talemi, S.; Figueiredo , . S.; Schaber, J.: To senesce or not to senesce: how primary human fibroblasts decide their cell fate after DNA damage. Aging 8 (1), pp. 158 - 176 (2016)

Lapytsko, A.; Schaber, J.: How time delay and network design shape response patterns in biochemical negative feedback systems. BMC Systems Biology 10, 82 (2016)

Rastgou Talemi, S.; Tiger, .-F.; Andersson, M.; Babazadeh, R.; Welkenhuysen, N.; Klipp, E.; Hohmann, S.; Schaber, J.: Systems Level Analysis of the Yeast Osmo-Stat. Scientific Reports 6, 30950 (2016)

Santos da Silva, F.; Seidel-Morgenstern, A.: Evaluation of center-cut separations applying simulated moving bed chromatography with 8 zones. Journal of Chromatography A 1456, pp. 123 - 136 (2016)

Schaap, P.; Barrantes Bustinza, I. W.; Minx, P.; Sasaki, N.; Anderson, R. W.; Bénard, M.; Biggar , K. K.; Buchler , N. E.; Bundschuh , R.; Chen, X. et al.; Fronick, C.; Fulton , L.; Golderer, G.; Jahn, N.; Knoop, V.; Landweber, L. F.; Maric , C.; Miller, D.; Noegel , A. A.; Peace, R.; Pierron, G.; Sasaki , T.; Schallenberg-Rüdinger , M.; Schleicher, M.; Singh, R.; Spaller , T.; Storey , K. B.; Suzuki , T.; Tomlinson, C.; Tyson, J. J.; Warren , W. C.; Werner , E. R.; Werner-Felmayer, G.; Wilson, R. K.; Winckler , T.; M. Gott , .; Glöckner , G.; Marwan, W.: The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling. Genome Biology and Evolution 8 (1), pp. 109 - 125 (2016)

Streif, S.; Kim, K.-K. K.; Rumschinski, P.; Kishida, M.; Shen, D. E.; Findeisen, R.; Braatz, R. D.: Robustness analysis, prediction, and estimation for uncertain biochemical networks: An overview. Journal of Process Control 42, pp. 14 - 34 (2016)

Tapia, F.; Vázquez-Ramirez, D.; Genzel, Y.; Reichl, U.: Bioreactors for high cell density and continuous multi-stage cultivations: options for process intensification in cell culture-based viral vaccine production. Applied Microbiology and Biotechnology 100 (5), pp. 2121 - 2132 (2016)

Temmel, E.; Eicke, M.; Lorenz, H.; Seidel-Morgenstern, A.: A Short-Cut Method for the Quantification of Crystallization Kinetics. 2. Experimental Application. Crystal Growth & Design 16 (12), pp. 6756 - 6768 (2016)

Temmel, E.; Eisenschmidt, H.; Lorenz, H.; Sundmacher, K.; Seidel-Morgenstern, A.: A Short-Cut Method for the Quantification of Crystallization Kinetics. 1. Method Development. Crystal Growth & Design 16 (12), pp. 6743 - 6755 (2016)

Wang, W.; Voigt, A.; Sundmacher, K.: The interaction of protein-coated bionanoparticles and surface receptors reevaluated: how important is the number of bonds? Soft Matter 12 (30), pp. 6451 - 6462 (2016)

Wang, W.; Voigt, A.; Wolff, M. W.; Reichl, U.; Sundmacher, K.: Binding kinetics and multi-bond: Finding correlations by synthesizing interactions between ligand-coated bionanoparticles and receptor surfaces. Analytical Biochemistry 505, pp. 8 - 17 (2016)

Yu, H.; Janiga, G.; Thévenin, D.: Computational Fluid Dynamics‐Based Design Optimization Method for Archimedes Screw Blood Pumps. International Journal of Artificial Organs 40 (4), pp. 341 - 352 (2016)

Zhou, T.; Wang, J.; McBride, K.; Sundmacher, K.: Optimal design of solvents for extractive reaction processes. AIChE-Journal 62 (9), pp. 3238 - 3249 (2016)

Heiner, M.; Rohr, C.; Schwarick , M.; Tovchigrechko, A. A.: MARCIE’s Secrets of Efficient Model Checking. In: Transactions on petri nets and other models of concurrency XI. Lecture Notes in Computer Science, Vol. 9930, pp. 286 - 296. Springer, Berlin, Heidelberg (2016)

Bäthge, T.; Lucia, S.; Findeisen, R.: Exploiting Models of Different Granularity in Robust Predictive Control. In: 2016 IEEE 55th Conference on Decision and Control (CDC), pp. 2763 - 2768. 2016 IEEE 55th Conference on Decision and Control (CDC), Las Vegas, NV, USA, December 12, 2016 - December 14, 2016. (2016)

Benner, P.; Grundel, S.; Mlinarić, P.: Stability Preserving Model Reduction for Linearly Coupled Linear Time-Invariant Systems. Joint 87th Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM) and Deutsche Mathematiker-Vereinigung(DMV), Braunschweig, Germany, March 07, 2016 - March 11, 2016. Proceedings in Applied Mathematics and Mechanics 16 (1), pp. 817 - 818 (2016)

Bremer, J.; Goyal, P. K.; Feng, L.; Benner, P.; Sundmacher, K.: Nonlinear Model Order Reduction for Catalytic Tubular Reactors. In: 26th European Symposium on Computer Aided Process Engineering, pp. 2373 - 2378. 26th European Symposium on Computer Aided Process Engineering - ESCAPE 26, Portorož, Slovenia, June 12, 2016 - June 15, 2016. (2016)

Dürr, R.; Duvigneau, S.; Laske, T.; Bachmann, M.; Kienle, A.: Analyzing the Impact of Heterogeneity in Genetically Engineered Cell Lines for Influenza Vaccine Production Using Population Balance Modeling. Foundations of Systems Biology in Engineering - FOSBE 2016 — Magdeburg, Germany, 9—12 October 2016, Magdeburg, Germany, October 09, 2016 - October 12, 2016. IFAC-PapersOnLine 49 (26), pp. 225 - 230 (2016)

Geyyer, R.; Dürr, R.; Temmel, E.; Li, T.; Lorenz, H.; Palis, S.; Seidel-Morgenstern, A.; Kienle, A.: Control of MSMPR crystallization processes. In: BIWIC 2016, 23rd International Workshop on Industrial Crystallization, pp. 335 - 341. BIWIC 2016 - 23rd International Workshop on Industrial Crystallization, Magdeburg, Germany, September 06, 2016 - September 08, 2016. Cuvillier, Göttingen (2016)

Goyal, P. K.; Benner, P.: An Iterative Model Order Reduction Scheme for a Special Class of Bilinear Descriptor Systems Appearing in Constraint Circuit Simulation. In: Proceedings of the VII European Congress on Computational Methods in Applied Sciences and Engineering: Volume II, pp. 4196 - 4212 (Eds. Papadrakakis, M.; Papadopoulos, V.; Stefanou, G.; Plevris, V.). VII European Congress on Computational Methods in Applied Sciences and Engineering, Crete Island, Greece, June 05, 2016 - June 10, 2016. National Technical University of Athens (NTUA), Athens, Greece (2016)

Jabarivelisdeh, B.; Waldherr, S.: Improving Bioprocess Productivity Using Constraint-Based Models in a Dynamic Optimization Scheme. Foundations of Systems Biology in Engineering - FOSBE 2016, Magdeburg, Germany , October 09, 2016 - October 12, 2016. IFAC-PapersOnLine 49 (26), pp. 245 - 251 (2016)

Jost, F.; Rinke, K.; Fischer, T.; Schalk, E.; Sager, S.: Optimum Experimental Design for Patient Specific Mathematical Leukopenia Models. Foundations of Systems Biology in Engineering - FOSBE 2016, Magdeburg, Germany, October 09, 2016 - October 12, 2016. IFAC-Papers OnLine 49 (26), pp. 344 - 349 (2016)

Kallies, C.; Schliemann-Bullinger, M.; Findeisen, R.; Lucia, S.; Bullinger, E.: Monotonicity of Kinetic Proofreading. FOSBE 2016 - 6th IFAC Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany, October 09, 2016 - October 12, 2016. IFAC-PapersOnLine 49 (26), pp. 306 - 311 (2016)

Kishida , M.; Kögel, M.; Findeisen, R.: Verifying Robust Forward Admissibility for Nonlinear Systems using (Skewed) Structured Singular Values. In: 2016 55th IEEE Conference on Decision and Control (CDC), pp. 4065 - 4071. 55th IEEE Conference on Decision and Control (CDC), Las Vegas, USA , December 12, 2016 - December 14, 2016. (2016)

Kögel, M.; Findeisen, R.: Sampled-data, output feedback predictive control of uncertain, nonlinear systems. 10th IFAC Symposium on Nonlinear Control Systems NOLCOS 2016, Monterey, CA, USA, August 23, 2016 - August 25, 2016. IFAC- PapersOnLine 49 (18), pp. 47 - 52 (2016)

Kögel, M.; Findeisen, R.: Output feedback MPC with send-on-delta measurements for uncertain systems. 6th IFAC Workshop on Distributed Estimation and Control in Networked Systems NECSYS 2016, Tokyo, Japan, September 08, 2016 - September 09, 2016. IFAC- PapersOnLine 49 (22), pp. 145 - 150 (2016)

Kweyu, C. M.; Hess, M. W.; Feng, L.; Stein, M.; Benner, P.: Reduced Basis Method for Poisson-Boltzmann Equation. In: Proceedings of the VII European Congress on Computational Methods in Applied Sciences and Engineering: Volume II, pp. 4187 - 4195 (Eds. Papadrakakis, M.; Papadopoulos, V.; Stefanou, G.; Plevris, V.). VII European Congress on Computational Methods in Applied Sciences and Engineering, Crete Island, Greece, June 05, 2016 - June 10, 2016. National Technical University of Athens (NTUA), Athens, Greece (2016)

Mlinarić, P.; Grundel, S.; Benner, P.: Clustering-Based Model Order Reduction for Multi-Agent Systems with General Linear Time-Invariant Agents. In: Proceedings of the 22nd International Symposium on Mathematical Theory of Networks and Systems, pp. 230 - 235. 22nd International Symposium on Mathematical Theory of Networks and Systems, Minneapolis, USA, July 12, 2016 - July 15, 2016. (2016)

Rinke, K.; Jost, F.; Findeisen, R.; Fischer, T.; Bartsch, R.; Schalk, E.; Sager, S.: Parameter estimation for leukocyte dynamics after chemotherapy. Foundations of Systems Biology in Engineering - FOSBE 2016, Magdeburg, Germany, October 09, 2016 - October 12, 2016. IFAC-Papers OnLine 49 (26), pp. 44 - 49 (2016)

Rohr, C.: Discrete-Time Leap Method For Stochastic Simulation. In: Proceedings of the International Workshop on Petri Nets and Software Engineering 2016, including the International Workshop on Biological Processes & Petri Nets 2016. CEUR Workshop Proceedings, Vol. 1591, pp. 362 - 376. 7rd International Workshop on Biological Processes & Petri Nets (BioPPN 2016), Toruń, Poland , June 20, 2016. (2016)

Rudolph, N.; Streif, S.; Findeisen, R.: Set-Based Experiment Design for Model Discrimination Using Bilevel Optimization. FOSBE 2016 - 6th IFAC Conference on Foundations of Systems Biology in Engineering, Magdeburg, Germany, October 09, 2016 - October 12, 2016. IFAC-PapersOnLine 49 (26), pp. 295 - 299 (2016)

Zometa, P.; Heinemann, H.; Lucia, S.; Kögel, M.; Findeisen, R.: Efficient stochastic model predictive control for embedded systems based on second-order cone programs. In: European Control Conference (ECC) 2016, pp. 166 - 171. European Control Conference (ECC) 2016 , Aalborg, Denmark , June 29, 2016 - July 01, 2016. (2016)

Aydin, E.; Sundmacher, K.: Dynamic Optimization of Constrained SEMI-Batch Processes Using Pontryagin’s Minimum Principle – an Effective Quasi-Newton Based Approach. In Conference Proceedings of AIChE Annual Meeting 2016, 28f. AIChE Annual Meeting 2016, San Francisco, USA, November 13, 2016 - November 18, 2016. (2016)

Benner, P.; Goyal, P. K.: Algebraic Gramians for Quadratic-Bilinear Systems and their Application in Model Order Reduction. In Proceedings of the 22nd International Symposium on Mathematical Theory of Networks and Systems, pp. 81 - 83. 22nd International Symposium on Mathematical Theory of Networks and Systems, Minnesota, USA, July 12, 2016 - July 15, 2016. (2016)

Emenike, V. N.; Krewer, U.: Model-based optimal design of continuous flow reactors for the synthesis of active pharmaceutical ingredients. In Chemie-Ingenieur-Technik, 88 (9), pp. 1215 - 1216. 32. DECHEMA-Jahrestagung der Biotechnologen 2016, Aachen, Germany, September 12, 2016 - September 15, 2016. Wiley-VCH, Weinheim, Germany (2016)

Li, T.; Lorenz, H.; Seidel-Morgenstern, A.: Basic studies on calcium propionate crystallization. In BIWIC 2016, 23rd International Workshop on Industrial Crystallization, p. 125 - 125. BIWIC 2016 - 23rd International Workshop on Industrial Crystallization, Magdeburg, Germany, September 06, 2016 - September 08, 2016. Cuvillier, Göttingen (2016)